Analysis of interatomic Contacts of Structural Units in PDB entry:
5IY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IY0 entry

There are 6 chains in PDB entry 5IY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	VAL 252
B	SER 0	VAL 252
C	SER 0	VAL 252
D	SER 0	VAL 252
E	SER 0	VAL 252
F	SER 0	VAL 252

There are 54 helices in PDB entry 5IY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	17	Right-handed alpha
Helix 2	AA2	A	24	32	Right-handed alpha
Helix 3	AA3	A	46	53	Right-handed alpha
Helix 4	AA4	A	53	63	Right-handed alpha
Helix 5	AA5	A	63	84	Right-handed alpha
Helix 6	AA6	A	105	107	Right-handed 310
Helix 7	AA7	A	108	112	Right-handed 310
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	210	212	Right-handed 310
Helix 10	AB1	B	2	17	Right-handed alpha
Helix 11	AB2	B	24	32	Right-handed alpha
Helix 12	AB3	B	46	53	Right-handed alpha
Helix 13	AB4	B	53	63	Right-handed alpha
Helix 14	AB5	B	63	84	Right-handed alpha
Helix 15	AB6	B	105	107	Right-handed 310
Helix 16	AB7	B	108	112	Right-handed 310
Helix 17	AB8	B	190	194	Right-handed 310
Helix 18	AB9	B	210	212	Right-handed 310
Helix 19	AC1	C	2	17	Right-handed alpha
Helix 20	AC2	C	24	32	Right-handed alpha
Helix 21	AC3	C	46	53	Right-handed alpha
Helix 22	AC4	C	53	63	Right-handed alpha
Helix 23	AC5	C	63	84	Right-handed alpha
Helix 24	AC6	C	105	107	Right-handed 310
Helix 25	AC7	C	108	112	Right-handed 310
Helix 26	AC8	C	190	194	Right-handed 310
Helix 27	AC9	C	210	212	Right-handed 310
Helix 28	AD1	D	2	17	Right-handed alpha
Helix 29	AD2	D	24	32	Right-handed alpha
Helix 30	AD3	D	46	53	Right-handed alpha
Helix 31	AD4	D	53	63	Right-handed alpha
Helix 32	AD5	D	63	83	Right-handed alpha
Helix 33	AD6	D	105	107	Right-handed 310
Helix 34	AD7	D	108	112	Right-handed 310
Helix 35	AD8	D	190	194	Right-handed 310
Helix 36	AD9	D	210	212	Right-handed 310
Helix 37	AE1	E	2	17	Right-handed alpha
Helix 38	AE2	E	24	32	Right-handed alpha
Helix 39	AE3	E	46	53	Right-handed alpha
Helix 40	AE4	E	53	63	Right-handed alpha
Helix 41	AE5	E	63	84	Right-handed alpha
Helix 42	AE6	E	105	107	Right-handed 310
Helix 43	AE7	E	108	112	Right-handed 310
Helix 44	AE8	E	190	194	Right-handed 310
Helix 45	AE9	E	210	212	Right-handed 310
Helix 46	AF1	F	2	17	Right-handed alpha
Helix 47	AF2	F	24	32	Right-handed alpha
Helix 48	AF3	F	46	53	Right-handed alpha
Helix 49	AF4	F	53	63	Right-handed alpha
Helix 50	AF5	F	63	84	Right-handed alpha
Helix 51	AF6	F	105	107	Right-handed 310
Helix 52	AF7	F	108	112	Right-handed 310
Helix 53	AF8	F	190	194	Right-handed 310
Helix 54	AF9	F	210	212	Right-handed 310

There are 18 sheets in PDB entry 5IY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	45	first strand
Strand 2	A	92	96	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	103	first strand
Strand 2	A	115	139	parallel
Strand 3	A	170	172	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	149	first strand
Strand 2	A	115	139	anti-parallel
Strand 3	A	178	188	anti-parallel
Strand 4	A	202	208	anti-parallel
Strand 5	A	240	251	parallel
Strand 6	A	220	231	anti-parallel
Strand 7	A	115	139	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	45	first strand
Strand 2	B	92	96	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	115	125	parallel
Strand 3	B	178	188	anti-parallel
Strand 4	B	129	139	anti-parallel
Strand 5	B	145	149	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	178	188	anti-parallel
Strand 4	B	202	208	anti-parallel
Strand 5	B	240	251	parallel
Strand 6	B	220	231	anti-parallel
Strand 7	B	115	125	anti-parallel
Strand 8	B	178	188	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	92	96	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	C	115	125	parallel
Strand 3	C	178	188	anti-parallel
Strand 4	C	129	139	anti-parallel
Strand 5	C	145	149	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	129	139	anti-parallel
Strand 3	C	178	188	anti-parallel
Strand 4	C	202	208	anti-parallel
Strand 5	C	240	251	parallel
Strand 6	C	220	231	anti-parallel
Strand 7	C	115	125	anti-parallel
Strand 8	C	178	188	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	45	first strand
Strand 2	D	92	96	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	103	first strand
Strand 2	D	115	125	parallel
Strand 3	D	178	188	anti-parallel
Strand 4	D	129	139	anti-parallel
Strand 5	D	145	149	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	178	188	anti-parallel
Strand 4	D	202	208	anti-parallel
Strand 5	D	240	251	parallel
Strand 6	D	220	231	anti-parallel
Strand 7	D	115	125	anti-parallel
Strand 8	D	178	188	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	45	first strand
Strand 2	E	92	96	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	103	first strand
Strand 2	E	115	125	parallel
Strand 3	E	178	188	anti-parallel
Strand 4	E	129	139	anti-parallel
Strand 5	E	145	149	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	172	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	178	188	anti-parallel
Strand 4	E	202	208	anti-parallel
Strand 5	E	240	251	parallel
Strand 6	E	220	231	anti-parallel
Strand 7	E	115	125	anti-parallel
Strand 8	E	178	188	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	45	first strand
Strand 2	F	92	96	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	115	125	parallel
Strand 3	F	178	188	anti-parallel
Strand 4	F	129	139	anti-parallel
Strand 5	F	145	149	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	172	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	178	188	anti-parallel
Strand 4	F	202	208	anti-parallel
Strand 5	F	240	251	parallel
Strand 6	F	220	231	anti-parallel
Strand 7	F	115	125	anti-parallel
Strand 8	F	178	188	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IY0