Analysis of interatomic Contacts of Structural Units in PDB entry:
5IYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IYS entry

There is 1 chain in PDB entry 5IYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7TYR 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5IYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
12 27Right-handed alpha
Helix 3
AA3
A
27 35Right-handed alpha
Helix 4
AA4
A
38 61Right-handed alpha
Helix 5
AA5
A
64 81Right-handed alpha
Helix 6
AA6
A
86 99Right-handed alpha
Helix 7
AA7
A
103 117Right-handed alpha
Helix 8
AA8
A
124 136Right-handed alpha
Helix 9
AA9
A
136 144Right-handed alpha
Helix 10
AB1
A
145 147Right-handed 310
Helix 11
AB2
A
150 153Right-handed 310
Helix 12
AB3
A
154 173Right-handed alpha
Helix 13
AB4
A
173 180Right-handed alpha
Helix 14
AB5
A
186 194Right-handed alpha
Helix 15
AB6
A
196 202Right-handed 310
Helix 16
AB7
A
206 228Right-handed alpha
Helix 17
AB8
A
229 234Right-handed 310
Helix 18
AB9
A
235 237Right-handed 310
Helix 19
AC1
A
238 259Right-handed alpha
Helix 20
AC2
A
271 288Right-handed alpha
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There are no sheets in PDB entry 5IYS
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il