Analysis of interatomic Contacts of Structural Units in PDB entry:
5IZ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5IZ5 entry

There are 2 chains in PDB entry 5IZ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 16	ARG 807
A	GLY 16	ARG 807

There are 53 helices in PDB entry 5IZ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	112	114	Right-handed 310
Helix 2	AA2	B	287	310	Right-handed alpha
Helix 3	AA3	B	316	320	Right-handed 310
Helix 4	AA4	B	330	348	Right-handed alpha
Helix 5	AA5	B	350	354	Right-handed 310
Helix 6	AA6	B	362	372	Right-handed alpha
Helix 7	AA7	B	375	379	Right-handed 310
Helix 8	AA8	B	381	394	Right-handed alpha
Helix 9	AA9	B	395	399	Right-handed 310
Helix 10	AB1	B	401	419	Right-handed alpha
Helix 11	AB2	B	423	437	Right-handed alpha
Helix 12	AB3	B	444	453	Right-handed 310
Helix 13	AB4	B	498	502	Right-handed 310
Helix 14	AB5	B	519	528	Right-handed alpha
Helix 15	AB6	B	536	540	Right-handed 310
Helix 16	AB7	B	583	591	Right-handed alpha
Helix 17	AB8	B	613	616	Right-handed 310
Helix 18	AB9	B	617	622	Right-handed 310
Helix 19	AC1	B	647	651	Right-handed 310
Helix 20	AC2	B	655	661	Right-handed 310
Helix 21	AC3	B	680	693	Right-handed alpha
Helix 22	AC4	B	703	709	Right-handed alpha
Helix 23	AC5	B	752	756	Right-handed 310
Helix 24	AC6	B	774	791	Right-handed alpha
Helix 25	AC7	B	792	807	Right-handed alpha
Helix 26	AC8	A	112	114	Right-handed 310
Helix 27	AC9	A	287	310	Right-handed alpha
Helix 28	AD1	A	316	320	Right-handed 310
Helix 29	AD2	A	330	348	Right-handed alpha
Helix 30	AD3	A	350	354	Right-handed 310
Helix 31	AD4	A	362	372	Right-handed alpha
Helix 32	AD5	A	375	379	Right-handed 310
Helix 33	AD6	A	381	394	Right-handed alpha
Helix 34	AD7	A	401	419	Right-handed alpha
Helix 35	AD8	A	423	438	Right-handed alpha
Helix 36	AD9	A	444	453	Right-handed 310
Helix 37	AE1	A	498	502	Right-handed 310
Helix 38	AE2	A	519	528	Right-handed alpha
Helix 39	AE3	A	529	540	Right-handed alpha
Helix 40	AE4	A	576	580	Right-handed 310
Helix 41	AE5	A	583	590	Right-handed alpha
Helix 42	AE6	A	614	617	Right-handed 310
Helix 43	AE7	A	618	625	Right-handed alpha
Helix 44	AE8	A	626	631	Right-handed alpha
Helix 45	AE9	A	632	640	Right-handed 310
Helix 46	AF1	A	647	651	Right-handed 310
Helix 47	AF2	A	655	661	Right-handed 310
Helix 48	AF3	A	680	693	Right-handed alpha
Helix 49	AF4	A	703	709	Right-handed alpha
Helix 50	AF5	A	735	738	Right-handed 310
Helix 51	AF6	A	748	756	Right-handed 310
Helix 52	AF7	A	774	791	Right-handed alpha
Helix 53	AF8	A	792	807	Right-handed alpha

There are 18 sheets in PDB entry 5IZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	148	152	anti-parallel
Strand 3	B	156	158	anti-parallel
Strand 4	B	610	611	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	81	first strand
Strand 2	B	21	32	anti-parallel
Strand 3	B	133	142	anti-parallel
Strand 4	B	120	124	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	102	110	anti-parallel
Strand 5	B	628	629	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	212	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	265	273	anti-parallel
Strand 4	B	251	257	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	200	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	217	225	anti-parallel
Strand 4	B	240	244	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	495	497	anti-parallel
Strand 3	B	488	490	anti-parallel
Strand 4	B	479	483	anti-parallel
Strand 5	B	459	466	anti-parallel
Strand 6	B	645	646	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	282	first strand
Strand 2	B	495	497	anti-parallel
Strand 3	B	488	490	anti-parallel
Strand 4	B	479	483	anti-parallel
Strand 5	B	459	466	anti-parallel
Strand 6	B	356	359	parallel
Strand 7	B	323	327	parallel
Strand 8	B	668	672	parallel
Strand 9	B	726	730	parallel
Strand 10	B	714	716	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	507	first strand
Strand 2	B	510	513	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	742	first strand
Strand 2	B	745	746	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	148	152	anti-parallel
Strand 3	A	156	158	anti-parallel
Strand 4	A	610	611	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	81	first strand
Strand 2	A	21	32	anti-parallel
Strand 3	A	133	142	anti-parallel
Strand 4	A	120	125	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	60	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	102	110	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	212	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	262	273	anti-parallel
Strand 4	A	251	259	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	184	189	anti-parallel
Strand 3	A	217	224	anti-parallel
Strand 4	A	240	244	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	488	490	anti-parallel
Strand 4	A	478	483	anti-parallel
Strand 5	A	459	467	anti-parallel
Strand 6	A	645	646	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	495	497	anti-parallel
Strand 3	A	488	490	anti-parallel
Strand 4	A	478	483	anti-parallel
Strand 5	A	459	467	anti-parallel
Strand 6	A	356	359	parallel
Strand 7	A	323	327	parallel
Strand 8	A	668	672	parallel
Strand 9	A	726	730	parallel
Strand 10	A	714	716	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	510	513	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	742	first strand
Strand 2	A	745	746	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5IZ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5IZ5