Analysis of interatomic Contacts of Structural Units in PDB entry:
5IZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5IZV entry

There are 2 chains in PDB entry 5IZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49ASP 430
B
 SER 49ASP 430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5IZV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 62Right-handed 310
Helix 2
AA2
A
64 72Right-handed alpha
Helix 3
AA3
A
73 77Right-handed 310
Helix 4
AA4
A
136 153Right-handed alpha
Helix 5
AA5
A
203 207Right-handed 310
Helix 6
AA6
A
211 215Right-handed 310
Helix 7
AA7
A
220 232Right-handed alpha
Helix 8
AA8
A
257 276Right-handed alpha
Helix 9
AA9
A
288 293Right-handed alpha
Helix 10
AB1
A
294 308Right-handed alpha
Helix 11
AB2
A
312 321Right-handed alpha
Helix 12
AB3
A
328 345Right-handed alpha
Helix 13
AB4
A
358 378Right-handed alpha
Helix 14
AB5
A
384 398Right-handed alpha
Helix 15
AB6
A
401 413Right-handed alpha
Helix 16
AB7
A
417 423Right-handed alpha
Helix 17
AB8
B
58 62Right-handed 310
Helix 18
AB9
B
64 72Right-handed alpha
Helix 19
AC1
B
73 77Right-handed 310
Helix 20
AC2
B
136 152Right-handed alpha
Helix 21
AC3
B
211 215Right-handed 310
Helix 22
AC4
B
220 232Right-handed alpha
Helix 23
AC5
B
257 275Right-handed alpha
Helix 24
AC6
B
288 293Right-handed alpha
Helix 25
AC7
B
294 308Right-handed alpha
Helix 26
AC8
B
312 321Right-handed alpha
Helix 27
AC9
B
328 346Right-handed alpha
Helix 28
AD1
B
358 378Right-handed alpha
Helix 29
AD2
B
384 398Right-handed alpha
Helix 30
AD3
B
399 412Right-handed alpha
Helix 31
AD4
B
417 423Right-handed alpha
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There are 10 sheets in PDB entry 5IZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
310 311anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
110 114anti-parallel
Strand 4
A
157 167parallel
Strand 5
A
176 185anti-parallel
Strand 6
A
190 197anti-parallel
Strand 7
A
238 239parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
121 124anti-parallel
Strand 3
A
157 167parallel
Strand 4
A
176 185anti-parallel
Strand 5
A
190 197anti-parallel
Strand 6
A
243 246parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 282first strand
Strand 2
A
285 286parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
426 427parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
310 311anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 90first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
110 114anti-parallel
Strand 4
B
157 167parallel
Strand 5
B
176 185anti-parallel
Strand 6
B
190 197anti-parallel
Strand 7
B
238 239parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
121 124anti-parallel
Strand 3
B
157 167parallel
Strand 4
B
176 185anti-parallel
Strand 5
B
190 197anti-parallel
Strand 6
B
243 246parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 282first strand
Strand 2
B
285 286parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 383first strand
Strand 2
B
426 427parallel
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