Analysis of interatomic Contacts of Structural Units in PDB entry:
5J0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J0A entry

There are 2 chains in PDB entry 5J0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 23ALA 321
B
 SER 19ALA 321
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5J0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 38Right-handed alpha
Helix 2
AA2
A
53 58Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
68 71Right-handed 310
Helix 5
AA5
A
72 78Right-handed alpha
Helix 6
AA6
A
83 92Right-handed alpha
Helix 7
AA7
A
123 132Right-handed alpha
Helix 8
AA8
A
139 160Right-handed alpha
Helix 9
AA9
A
169 171Right-handed 310
Helix 10
AB1
A
209 213Right-handed 310
Helix 11
AB2
A
214 218Right-handed 310
Helix 12
AB3
A
226 243Right-handed alpha
Helix 13
AB4
A
267 275Right-handed alpha
Helix 14
AB5
A
290 301Right-handed alpha
Helix 15
AB6
A
304 308Right-handed 310
Helix 16
AB7
A
310 320Right-handed alpha
Helix 17
AB8
B
32 38Right-handed alpha
Helix 18
AB9
B
53 58Right-handed alpha
Helix 19
AC1
B
61 66Right-handed alpha
Helix 20
AC2
B
68 71Right-handed 310
Helix 21
AC3
B
72 78Right-handed alpha
Helix 22
AC4
B
82 92Right-handed alpha
Helix 23
AC5
B
123 130Right-handed alpha
Helix 24
AC6
B
139 159Right-handed alpha
Helix 25
AC7
B
169 171Right-handed 310
Helix 26
AC8
B
209 213Right-handed 310
Helix 27
AC9
B
214 219Right-handed alpha
Helix 28
AD1
B
226 243Right-handed alpha
Helix 29
AD2
B
262 266Right-handed 310
Helix 30
AD3
B
267 275Right-handed alpha
Helix 31
AD4
B
282 286Right-handed 310
Helix 32
AD5
B
290 301Right-handed alpha
Helix 33
AD6
B
304 308Right-handed 310
Helix 34
AD7
B
310 319Right-handed alpha
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There are 6 sheets in PDB entry 5J0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
44 47anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
100 102anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
173 176anti-parallel
Strand 3
A
181 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 29first strand
Strand 2
B
44 47anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
111 115anti-parallel
Strand 3
B
100 102anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
173 176anti-parallel
Strand 3
B
181 184anti-parallel
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