Analysis of interatomic Contacts of Structural Units in PDB entry:
5J0F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J0F entry

There are 2 chains in PDB entry 5J0F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ALA 114
B	ALA 1	ALA 114

There are no helices in PDB entry 5J0F

There are 2 sheets in PDB entry 5J0F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	9	first strand
Strand 2	A	105	112	anti-parallel
Strand 3	A	36	40	anti-parallel
Strand 4	A	51	59	anti-parallel
Strand 5	A	66	73	anti-parallel
Strand 6	A	79	86	anti-parallel
Strand 7	A	93	100	anti-parallel
Strand 8	A	15	21	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	9	first strand
Strand 2	B	15	21	anti-parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	79	86	anti-parallel
Strand 5	B	65	73	anti-parallel
Strand 6	B	51	62	anti-parallel
Strand 7	B	36	40	anti-parallel
Strand 8	B	105	111	anti-parallel
Strand 9	B	3	9	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J0F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J0F