Analysis of interatomic Contacts of Structural Units in PDB entry:
5J0N

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J0N entry

There are 15 chains in PDB entry 5J0N (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G -117	T 79
B	C -21	C 117
C	C -19	G 21
D	A -79	G 19
E	ASN 72	LYS 356
F	MET 1	LYS 356
G	MET 1	LYS 356
H	MET 1	LYS 356
I	ALA 2	LYS 97
J	MET 1	GLY 94
K	ALA 2	LYS 97
L	MET 1	GLY 94
M	MET 1	ASN 53
N	MET 1	ARG 54
O	MET 1	PRO 55

There are 79 helices in PDB entry 5J0N. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	75	89	Right-handed alpha
Helix 2	AA2	E	93	109	Right-handed alpha
Helix 3	AA3	E	115	119	Right-handed 310
Helix 4	AA4	E	120	134	Right-handed alpha
Helix 5	AA5	E	136	158	Right-handed alpha
Helix 6	AA6	E	181	192	Right-handed alpha
Helix 7	AA7	E	198	209	Right-handed alpha
Helix 8	AA8	E	212	217	Right-handed alpha
Helix 9	AA9	E	255	265	Right-handed alpha
Helix 10	AB1	E	281	286	Right-handed alpha
Helix 11	AB2	E	286	297	Right-handed alpha
Helix 12	AB3	E	308	319	Right-handed alpha
Helix 13	AB4	E	323	332	Right-handed alpha
Helix 14	AB5	F	8	12	Right-handed 310
Helix 15	AB6	F	40	45	Right-handed alpha
Helix 16	AB7	F	50	54	Right-handed 310
Helix 17	AB8	F	78	88	Right-handed alpha
Helix 18	AB9	F	95	109	Right-handed alpha
Helix 19	AC1	F	120	133	Right-handed alpha
Helix 20	AC2	F	136	156	Right-handed alpha
Helix 21	AC3	F	163	167	Right-handed 310
Helix 22	AC4	F	182	191	Right-handed alpha
Helix 23	AC5	F	192	194	Right-handed 310
Helix 24	AC6	F	196	209	Right-handed alpha
Helix 25	AC7	F	212	217	Right-handed alpha
Helix 26	AC8	F	255	265	Right-handed alpha
Helix 27	AC9	F	281	297	Right-handed alpha
Helix 28	AD1	F	308	322	Right-handed alpha
Helix 29	AD2	F	325	330	Right-handed alpha
Helix 30	AD3	G	40	45	Right-handed alpha
Helix 31	AD4	G	45	53	Right-handed alpha
Helix 32	AD5	G	75	89	Right-handed alpha
Helix 33	AD6	G	93	109	Right-handed alpha
Helix 34	AD7	G	120	133	Right-handed alpha
Helix 35	AD8	G	138	158	Right-handed alpha
Helix 36	AD9	G	163	167	Right-handed 310
Helix 37	AE1	G	182	192	Right-handed alpha
Helix 38	AE2	G	196	206	Right-handed alpha
Helix 39	AE3	G	212	217	Right-handed alpha
Helix 40	AE4	G	218	219	Right-handed 310
Helix 41	AE5	G	220	224	Right-handed 310
Helix 42	AE6	G	255	265	Right-handed alpha
Helix 43	AE7	G	281	286	Right-handed alpha
Helix 44	AE8	G	286	297	Right-handed alpha
Helix 45	AE9	G	308	322	Right-handed alpha
Helix 46	AF1	G	323	328	Right-handed alpha
Helix 47	AF2	H	7	12	Right-handed 310
Helix 48	AF3	H	40	52	Right-handed alpha
Helix 49	AF4	H	75	88	Right-handed alpha
Helix 50	AF5	H	94	108	Right-handed alpha
Helix 51	AF6	H	121	129	Right-handed alpha
Helix 52	AF7	H	130	132	Right-handed 310
Helix 53	AF8	H	136	157	Right-handed alpha
Helix 54	AF9	H	181	192	Right-handed alpha
Helix 55	AG1	H	197	209	Right-handed alpha
Helix 56	AG2	H	220	222	Right-handed 310
Helix 57	AG3	H	255	260	Right-handed alpha
Helix 58	AG4	H	260	265	Right-handed alpha
Helix 59	AG5	H	281	286	Right-handed alpha
Helix 60	AG6	H	286	296	Right-handed alpha
Helix 61	AG7	H	308	318	Right-handed alpha
Helix 62	AG8	I	4	14	Right-handed alpha
Helix 63	AG9	I	19	41	Right-handed alpha
Helix 64	AH1	I	84	92	Right-handed alpha
Helix 65	AH2	J	4	14	Right-handed alpha
Helix 66	AH3	J	18	40	Right-handed alpha
Helix 67	AH4	J	83	91	Right-handed alpha
Helix 68	AH5	K	4	17	Right-handed alpha
Helix 69	AH6	K	19	41	Right-handed alpha
Helix 70	AH7	K	84	90	Right-handed alpha
Helix 71	AH8	L	2	14	Right-handed alpha
Helix 72	AH9	L	18	40	Right-handed alpha
Helix 73	AI1	L	83	91	Right-handed alpha
Helix 74	AI2	M	4	10	Right-handed alpha
Helix 75	AI3	M	17	27	Right-handed alpha
Helix 76	AI4	N	4	11	Right-handed alpha
Helix 77	AI5	N	17	27	Right-handed alpha
Helix 78	AI6	O	4	10	Right-handed alpha
Helix 79	AI7	O	17	27	Right-handed alpha

There are 21 sheets in PDB entry 5J0N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	232	first strand
Strand 2	E	239	241	anti-parallel
Strand 3	F	351	352	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	248	first strand
Strand 2	E	253	254	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	18	first strand
Strand 2	F	24	27	anti-parallel
Strand 3	F	34	36	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	224	225	first strand
Strand 2	F	228	232	anti-parallel
Strand 3	F	239	243	anti-parallel
Strand 4	G	351	352	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	247	248	first strand
Strand 2	F	253	254	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	232	first strand
Strand 2	G	239	241	anti-parallel
Strand 3	H	351	352	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	248	first strand
Strand 2	G	253	254	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	27	first strand
Strand 2	H	34	36	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	224	225	first strand
Strand 2	H	228	232	anti-parallel
Strand 3	H	239	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	247	248	first strand
Strand 2	H	253	254	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	46	first strand
Strand 2	I	50	57	anti-parallel
Strand 3	I	76	83	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	45	first strand
Strand 2	J	49	55	anti-parallel
Strand 3	J	76	80	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	44	46	first strand
Strand 2	K	50	52	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	57	first strand
Strand 2	K	76	79	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	43	45	first strand
Strand 2	L	49	56	anti-parallel
Strand 3	L	75	80	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	30	31	first strand
Strand 2	M	48	49	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	41	42	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	2	3	first strand
Strand 2	N	43	44	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	31	first strand
Strand 2	N	48	49	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	30	31	first strand
Strand 2	O	48	49	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	35	37	first strand
Strand 2	O	40	42	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J0N

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J0N