Analysis of interatomic Contacts of Structural Units in PDB entry:
5J14


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J14 entry

There are 2 chains in PDB entry 5J14 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 29ASP 478
B
 THR 31PRO 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5J14. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
73 83Right-handed alpha
Helix 2
AA2
A
93 98Right-handed alpha
Helix 3
AA3
A
105 122Right-handed alpha
Helix 4
AA4
A
136 140Right-handed 310
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
163 167Right-handed 310
Helix 7
AA7
A
168 180Right-handed alpha
Helix 8
AA8
A
184 201Right-handed alpha
Helix 9
AA9
A
220 225Right-handed 310
Helix 10
AB1
A
229 251Right-handed alpha
Helix 11
AB2
A
261 267Right-handed 310
Helix 12
AB3
A
294 304Right-handed alpha
Helix 13
AB4
A
306 311Right-handed 310
Helix 14
AB5
A
312 332Right-handed alpha
Helix 15
AB6
A
347 359Right-handed alpha
Helix 16
AB7
A
378 385Right-handed alpha
Helix 17
AB8
B
73 83Right-handed alpha
Helix 18
AB9
B
93 98Right-handed alpha
Helix 19
AC1
B
105 122Right-handed alpha
Helix 20
AC2
B
136 140Right-handed 310
Helix 21
AC3
B
145 149Right-handed 310
Helix 22
AC4
B
163 167Right-handed 310
Helix 23
AC5
B
168 180Right-handed alpha
Helix 24
AC6
B
184 201Right-handed alpha
Helix 25
AC7
B
217 225Right-handed 310
Helix 26
AC8
B
229 251Right-handed alpha
Helix 27
AC9
B
261 267Right-handed 310
Helix 28
AD1
B
313 332Right-handed alpha
Helix 29
AD2
B
347 358Right-handed alpha
Helix 30
AD3
B
378 385Right-handed alpha
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There are 10 sheets in PDB entry 5J14. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
42 44anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
388 392anti-parallel
Strand 3
A
421 424anti-parallel
Strand 4
A
451 456anti-parallel
Strand 5
A
441 443anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
256 258parallel
Strand 3
A
206 210parallel
Strand 4
A
125 130parallel
Strand 5
A
87 92parallel
Strand 6
A
54 58parallel
Strand 7
A
361 364parallel
Strand 8
A
336 337parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
339 340parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 401first strand
Strand 2
A
408 414anti-parallel
Strand 3
A
462 467anti-parallel
Strand 4
A
435 439anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
42 44anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
388 392anti-parallel
Strand 3
B
421 424anti-parallel
Strand 4
B
451 456anti-parallel
Strand 5
B
441 443anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 288first strand
Strand 2
B
256 258parallel
Strand 3
B
206 210parallel
Strand 4
B
125 130parallel
Strand 5
B
87 92parallel
Strand 6
B
54 58parallel
Strand 7
B
361 364parallel
Strand 8
B
336 337parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 292first strand
Strand 2
B
339 340parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 401first strand
Strand 2
B
408 414anti-parallel
Strand 3
B
462 467anti-parallel
Strand 4
B
435 439anti-parallel
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