Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1B entry

There are 2 chains in PDB entry 5J1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 84ASP 347
B
 ASN 84LEU 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5J1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
86 105Right-handed alpha
Helix 2
AA2
A
105 110Right-handed alpha
Helix 3
AA3
A
117 129Right-handed alpha
Helix 4
AA4
A
133 141Right-handed alpha
Helix 5
AA5
A
166 187Right-handed alpha
Helix 6
AA6
A
280 294Right-handed alpha
Helix 7
AA7
A
326 343Right-handed alpha
Helix 8
AA8
B
86 105Right-handed alpha
Helix 9
AA9
B
105 112Right-handed alpha
Helix 10
AB1
B
117 129Right-handed alpha
Helix 11
AB2
B
133 141Right-handed alpha
Helix 12
AB3
B
166 184Right-handed alpha
Helix 13
AB4
B
280 294Right-handed alpha
Helix 14
AB5
B
326 340Right-handed alpha
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There are 4 sheets in PDB entry 5J1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
273 278parallel
Strand 3
A
263 268anti-parallel
Strand 4
A
247 252anti-parallel
Strand 5
A
237 242anti-parallel
Strand 6
A
157 164anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 299first strand
Strand 2
A
313 316anti-parallel
Strand 3
A
324 325anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
273 278parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
247 252anti-parallel
Strand 5
B
237 242anti-parallel
Strand 6
B
157 164anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 299first strand
Strand 2
B
313 316anti-parallel
Strand 3
B
324 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il