Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1H entry

There are 2 chains in PDB entry 5J1H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 750GLU 1000
B
ALA 750LEU 996
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5J1H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
750 777Right-handed alpha
Helix 2
AA2
A
783 804Right-handed alpha
Helix 3
AA3
A
804 817Right-handed alpha
Helix 4
AA4
A
888 935Right-handed alpha
Helix 5
AA5
A
937 943Right-handed alpha
Helix 6
AA6
A
945 967Right-handed alpha
Helix 7
AA7
A
974 1000Right-handed alpha
Helix 8
AA8
B
751 776Right-handed alpha
Helix 9
AA9
B
783 817Right-handed alpha
Helix 10
AB1
B
890 935Right-handed alpha
Helix 11
AB2
B
937 944Right-handed alpha
Helix 12
AB3
B
948 967Right-handed alpha
Helix 13
AB4
B
976 996Right-handed alpha
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There are no sheets in PDB entry 5J1H

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