Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1I entry

There are 2 chains in PDB entry 5J1I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1007LEU 1368
B
 CYS 1009MET 1371
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5J1I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1007 1035Right-handed alpha
Helix 2
AA2
A
1041 1079Right-handed alpha
Helix 3
AA3
A
1086 1142Right-handed alpha
Helix 4
AA4
A
1148 1169Right-handed alpha
Helix 5
AA5
A
1169 1195Right-handed alpha
Helix 6
AA6
A
1200 1263Right-handed alpha
Helix 7
AA7
A
1268 1288Right-handed alpha
Helix 8
AA8
A
1288 1321Right-handed alpha
Helix 9
AA9
A
1334 1367Right-handed alpha
Helix 10
AB1
B
1010 1035Right-handed alpha
Helix 11
AB2
B
1041 1079Right-handed alpha
Helix 12
AB3
B
1086 1142Right-handed alpha
Helix 13
AB4
B
1148 1169Right-handed alpha
Helix 14
AB5
B
1169 1195Right-handed alpha
Helix 15
AB6
B
1200 1263Right-handed alpha
Helix 16
AB7
B
1268 1288Right-handed alpha
Helix 17
AB8
B
1288 1321Right-handed alpha
Helix 18
AB9
B
1335 1371Right-handed alpha
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There are no sheets in PDB entry 5J1I
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il