Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1J entry

There are 2 chains in PDB entry 5J1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5GLY 277
B
 HIS 8LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5J1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
53 59Right-handed alpha
Helix 3
AA3
A
65 71Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
84 86Right-handed 310
Helix 6
AA6
A
103 114Right-handed alpha
Helix 7
AA7
A
115 118Right-handed 310
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
153 172Right-handed alpha
Helix 10
AB1
A
187 204Right-handed alpha
Helix 11
AB2
A
217 227Right-handed alpha
Helix 12
AB3
A
229 234Right-handed alpha
Helix 13
AB4
A
237 253Right-handed alpha
Helix 14
AB5
B
23 38Right-handed alpha
Helix 15
AB6
B
53 59Right-handed alpha
Helix 16
AB7
B
65 71Right-handed alpha
Helix 17
AB8
B
75 80Right-handed 310
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
96 101Right-handed 310
Helix 20
AC2
B
103 114Right-handed alpha
Helix 21
AC3
B
115 118Right-handed 310
Helix 22
AC4
B
133 142Right-handed alpha
Helix 23
AC5
B
153 172Right-handed alpha
Helix 24
AC6
B
185 204Right-handed alpha
Helix 25
AC7
B
217 227Right-handed alpha
Helix 26
AC8
B
229 234Right-handed alpha
Helix 27
AC9
B
237 253Right-handed alpha
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There are 3 sheets in PDB entry 5J1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
A
275 276anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
42 47parallel
Strand 4
A
123 128parallel
Strand 5
A
11 16parallel
Strand 6
A
145 150parallel
Strand 7
A
175 183parallel
Strand 8
A
207 215parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
88 90anti-parallel
Strand 3
B
42 47parallel
Strand 4
B
123 128parallel
Strand 5
B
11 16parallel
Strand 6
B
145 150parallel
Strand 7
B
175 183parallel
Strand 8
B
207 215parallel
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