Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J1L entry

There are 4 chains in PDB entry 5J1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 129	GLN 299
B	ASN 123	ALA 304
C	ILE 127	GLN 299
D	ASN 123	GLN 297

There are 22 helices in PDB entry 5J1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	129	139	Right-handed alpha
Helix 2	AA2	A	145	153	Right-handed alpha
Helix 3	AA3	A	197	201	Right-handed 310
Helix 4	AA4	A	264	269	Right-handed alpha
Helix 5	AA5	A	276	282	Right-handed alpha
Helix 6	AA6	A	286	299	Right-handed alpha
Helix 7	AA7	B	125	136	Right-handed alpha
Helix 8	AA8	B	152	154	Right-handed 310
Helix 9	AA9	B	259	265	Right-handed alpha
Helix 10	AB1	B	273	277	Right-handed 310
Helix 11	AB2	B	282	295	Right-handed alpha
Helix 12	AB3	B	296	298	Right-handed 310
Helix 13	AB4	C	128	139	Right-handed alpha
Helix 14	AB5	C	197	201	Right-handed 310
Helix 15	AB6	C	264	269	Right-handed alpha
Helix 16	AB7	C	276	282	Right-handed alpha
Helix 17	AB8	C	286	299	Right-handed alpha
Helix 18	AB9	D	125	136	Right-handed alpha
Helix 19	AC1	D	152	154	Right-handed 310
Helix 20	AC2	D	259	265	Right-handed alpha
Helix 21	AC3	D	271	276	Right-handed alpha
Helix 22	AC4	D	282	295	Right-handed alpha

There are 11 sheets in PDB entry 5J1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	172	175	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	213	220	anti-parallel
Strand 5	A	203	208	anti-parallel
Strand 6	A	188	194	anti-parallel
Strand 7	A	230	231	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	167	first strand
Strand 2	A	172	175	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	260	262	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	236	239	anti-parallel
Strand 3	A	222	223	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	246	253	anti-parallel
Strand 4	B	209	219	anti-parallel
Strand 5	B	199	204	anti-parallel
Strand 6	B	184	190	anti-parallel
Strand 7	B	226	227	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	232	236	anti-parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	246	253	anti-parallel
Strand 5	B	256	257	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	172	175	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	203	208	anti-parallel
Strand 6	C	188	194	anti-parallel
Strand 7	C	230	231	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	172	175	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	260	262	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	236	239	anti-parallel
Strand 3	C	222	223	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	168	171	anti-parallel
Strand 3	D	246	253	anti-parallel
Strand 4	D	209	216	anti-parallel
Strand 5	D	199	204	anti-parallel
Strand 6	D	184	190	anti-parallel
Strand 7	D	226	227	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	168	171	anti-parallel
Strand 3	D	246	253	anti-parallel
Strand 4	D	256	257	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	232	235	anti-parallel
Strand 3	D	218	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1L