Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J1M entry

There are 4 chains in PDB entry 5J1M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 128	GLN 299
B	ASP 122	GLN 297
C	THR 128	LYS 300
D	ASP 122	GLU 298

There are 22 helices in PDB entry 5J1M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	139	Right-handed alpha
Helix 2	AA2	A	145	152	Right-handed alpha
Helix 3	AA3	A	197	201	Right-handed 310
Helix 4	AA4	A	264	269	Right-handed alpha
Helix 5	AA5	A	276	282	Right-handed alpha
Helix 6	AA6	A	286	297	Right-handed alpha
Helix 7	AA7	B	125	136	Right-handed alpha
Helix 8	AA8	B	152	154	Right-handed 310
Helix 9	AA9	B	259	265	Right-handed alpha
Helix 10	AB1	B	273	277	Right-handed 310
Helix 11	AB2	B	282	295	Right-handed alpha
Helix 12	AB3	C	129	139	Right-handed alpha
Helix 13	AB4	C	197	201	Right-handed 310
Helix 14	AB5	C	264	269	Right-handed alpha
Helix 15	AB6	C	276	282	Right-handed alpha
Helix 16	AB7	C	286	300	Right-handed alpha
Helix 17	AB8	D	125	136	Right-handed alpha
Helix 18	AB9	D	152	154	Right-handed 310
Helix 19	AC1	D	259	265	Right-handed alpha
Helix 20	AC2	D	271	276	Right-handed alpha
Helix 21	AC3	D	282	295	Right-handed alpha
Helix 22	AC4	D	296	298	Right-handed 310

There are 9 sheets in PDB entry 5J1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	165	first strand
Strand 2	A	170	175	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	213	220	anti-parallel
Strand 5	A	203	208	anti-parallel
Strand 6	A	188	194	anti-parallel
Strand 7	A	230	231	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	183	first strand
Strand 2	A	236	239	anti-parallel
Strand 3	A	222	223	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	168	171	anti-parallel
Strand 3	B	246	253	anti-parallel
Strand 4	B	209	219	anti-parallel
Strand 5	B	199	204	anti-parallel
Strand 6	B	184	190	anti-parallel
Strand 7	B	226	227	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	177	179	first strand
Strand 2	B	232	236	anti-parallel
Strand 3	B	209	219	anti-parallel
Strand 4	B	246	253	anti-parallel
Strand 5	B	256	257	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	172	175	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	213	220	anti-parallel
Strand 5	C	203	208	anti-parallel
Strand 6	C	188	194	anti-parallel
Strand 7	C	230	231	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	153	first strand
Strand 2	C	172	175	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	261	262	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	183	first strand
Strand 2	C	236	239	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	150	first strand
Strand 2	D	168	171	anti-parallel
Strand 3	D	246	253	anti-parallel
Strand 4	D	209	219	anti-parallel
Strand 5	D	199	204	anti-parallel
Strand 6	D	184	190	anti-parallel
Strand 7	D	226	227	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	179	first strand
Strand 2	D	232	236	anti-parallel
Strand 3	D	209	219	anti-parallel
Strand 4	D	246	253	anti-parallel
Strand 5	D	256	257	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J1M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1M