Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J1V entry

There are 3 chains in PDB entry 5J1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1SER 483
B
 SER -1LYS 482
C
 SER -1SER 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5J1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 151Right-handed 310
Helix 2
AA2
A
182 184Right-handed 310
Helix 3
AA3
A
196 217Right-handed alpha
Helix 4
AA4
A
247 255Right-handed alpha
Helix 5
AA5
A
261 282Right-handed alpha
Helix 6
AA6
A
290 292Right-handed 310
Helix 7
AA7
A
342 346Right-handed 310
Helix 8
AA8
A
347 352Right-handed alpha
Helix 9
AA9
A
358 375Right-handed alpha
Helix 10
AB1
A
383 396Right-handed alpha
Helix 11
AB2
A
399 406Right-handed alpha
Helix 12
AB3
A
408 410Right-handed 310
Helix 13
AB4
A
423 433Right-handed alpha
Helix 14
AB5
A
435 440Right-handed 310
Helix 15
AB6
A
444 458Right-handed alpha
Helix 16
AB7
A
467 472Right-handed alpha
Helix 17
AB8
A
473 481Right-handed 310
Helix 18
AB9
B
0 151Right-handed 310
Helix 19
AC1
B
182 184Right-handed 310
Helix 20
AC2
B
196 217Right-handed alpha
Helix 21
AC3
B
247 255Right-handed alpha
Helix 22
AC4
B
261 282Right-handed alpha
Helix 23
AC5
B
290 292Right-handed 310
Helix 24
AC6
B
342 346Right-handed 310
Helix 25
AC7
B
347 352Right-handed alpha
Helix 26
AC8
B
358 375Right-handed alpha
Helix 27
AC9
B
383 396Right-handed alpha
Helix 28
AD1
B
399 406Right-handed alpha
Helix 29
AD2
B
408 410Right-handed 310
Helix 30
AD3
B
423 433Right-handed alpha
Helix 31
AD4
B
435 440Right-handed 310
Helix 32
AD5
B
444 458Right-handed alpha
Helix 33
AD6
B
467 472Right-handed alpha
Helix 34
AD7
B
473 481Right-handed 310
Helix 35
AD8
C
0 151Right-handed 310
Helix 36
AD9
C
196 217Right-handed alpha
Helix 37
AE1
C
247 255Right-handed alpha
Helix 38
AE2
C
261 282Right-handed alpha
Helix 39
AE3
C
290 292Right-handed 310
Helix 40
AE4
C
347 352Right-handed alpha
Helix 41
AE5
C
358 375Right-handed alpha
Helix 42
AE6
C
383 396Right-handed alpha
Helix 43
AE7
C
399 406Right-handed alpha
Helix 44
AE8
C
435 440Right-handed 310
Helix 45
AE9
C
444 458Right-handed alpha
Helix 46
AF1
C
467 472Right-handed alpha
Helix 47
AF2
C
473 481Right-handed 310
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There are 14 sheets in PDB entry 5J1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
161 169anti-parallel
Strand 3
A
173 180anti-parallel
Strand 4
A
187 193anti-parallel
Strand 5
A
236 242anti-parallel
Strand 6
A
227 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
330 331anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
321 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 306first strand
Strand 2
A
311 316anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
416 417anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
161 169anti-parallel
Strand 3
B
173 180anti-parallel
Strand 4
B
187 193anti-parallel
Strand 5
B
236 242anti-parallel
Strand 6
B
227 233anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
284 285first strand
Strand 2
B
330 331anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
321 323anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 306first strand
Strand 2
B
311 316anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
412 413first strand
Strand 2
B
416 417anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
161 169anti-parallel
Strand 3
C
173 180anti-parallel
Strand 4
C
187 193anti-parallel
Strand 5
C
236 242anti-parallel
Strand 6
C
227 233anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 285first strand
Strand 2
C
330 331anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
294 296first strand
Strand 2
C
321 323anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 306first strand
Strand 2
C
311 316anti-parallel
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