Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J1X entry

There are 4 chains in PDB entry 5J1X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 273	THR 427
B	LYS 274	THR 427
C	MET 272	THR 427
D	PHE 273	THR 427

There are 8 helices in PDB entry 5J1X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	287	289	Right-handed 310
Helix 2	AA2	A	298	307	Right-handed 310
Helix 3	AA3	B	287	289	Right-handed 310
Helix 4	AA4	B	298	307	Right-handed 310
Helix 5	AA5	C	287	289	Right-handed 310
Helix 6	AA6	C	298	307	Right-handed 310
Helix 7	AA7	D	287	289	Right-handed 310
Helix 8	AA8	D	298	307	Right-handed 310

There are 16 sheets in PDB entry 5J1X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	293	first strand
Strand 2	A	326	329	anti-parallel
Strand 3	A	403	408	anti-parallel
Strand 4	A	358	363	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	418	424	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	391	394	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	410	412	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	293	first strand
Strand 2	B	326	329	anti-parallel
Strand 3	B	403	408	anti-parallel
Strand 4	B	358	363	anti-parallel
Strand 5	B	369	371	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	401	first strand
Strand 2	B	334	342	anti-parallel
Strand 3	B	418	424	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	391	394	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	410	412	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	326	329	anti-parallel
Strand 3	C	403	408	anti-parallel
Strand 4	C	358	363	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	334	342	anti-parallel
Strand 3	C	418	424	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	391	394	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	410	412	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	326	329	anti-parallel
Strand 3	D	403	408	anti-parallel
Strand 4	D	358	363	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	401	first strand
Strand 2	D	334	342	anti-parallel
Strand 3	D	418	424	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	341	first strand
Strand 2	D	391	394	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	357	first strand
Strand 2	D	410	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J1X

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J1X