Analysis of interatomic Contacts of Structural Units in PDB entry:
5J23

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J23 entry

There are 4 chains in PDB entry 5J23 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 3	ILE 320
B	ARG 3	ILE 320
C	ARG 3	ILE 320
D	ARG 3	ILE 320

There are 64 helices in PDB entry 5J23. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	20	Right-handed alpha
Helix 2	AA2	A	21	23	Right-handed 310
Helix 3	AA3	A	33	37	Right-handed 310
Helix 4	AA4	A	38	42	Right-handed 310
Helix 5	AA5	A	54	59	Right-handed alpha
Helix 6	AA6	A	78	85	Right-handed alpha
Helix 7	AA7	A	96	114	Right-handed alpha
Helix 8	AA8	A	114	124	Right-handed alpha
Helix 9	AA9	A	125	131	Right-handed alpha
Helix 10	AB1	A	151	164	Right-handed alpha
Helix 11	AB2	A	186	194	Right-handed alpha
Helix 12	AB3	A	212	220	Right-handed alpha
Helix 13	AB4	A	230	234	Right-handed 310
Helix 14	AB5	A	235	245	Right-handed alpha
Helix 15	AB6	A	263	269	Right-handed alpha
Helix 16	AB7	A	282	304	Right-handed alpha
Helix 17	AB8	B	13	20	Right-handed alpha
Helix 18	AB9	B	21	23	Right-handed 310
Helix 19	AC1	B	33	37	Right-handed 310
Helix 20	AC2	B	38	42	Right-handed 310
Helix 21	AC3	B	54	59	Right-handed alpha
Helix 22	AC4	B	78	85	Right-handed alpha
Helix 23	AC5	B	96	114	Right-handed alpha
Helix 24	AC6	B	114	124	Right-handed alpha
Helix 25	AC7	B	125	131	Right-handed alpha
Helix 26	AC8	B	151	163	Right-handed alpha
Helix 27	AC9	B	186	194	Right-handed alpha
Helix 28	AD1	B	212	220	Right-handed alpha
Helix 29	AD2	B	230	234	Right-handed 310
Helix 30	AD3	B	235	245	Right-handed alpha
Helix 31	AD4	B	263	269	Right-handed alpha
Helix 32	AD5	B	282	304	Right-handed alpha
Helix 33	AD6	C	13	20	Right-handed alpha
Helix 34	AD7	C	21	23	Right-handed 310
Helix 35	AD8	C	33	37	Right-handed 310
Helix 36	AD9	C	38	42	Right-handed 310
Helix 37	AE1	C	54	59	Right-handed alpha
Helix 38	AE2	C	78	85	Right-handed alpha
Helix 39	AE3	C	96	114	Right-handed alpha
Helix 40	AE4	C	114	124	Right-handed alpha
Helix 41	AE5	C	125	131	Right-handed alpha
Helix 42	AE6	C	151	164	Right-handed alpha
Helix 43	AE7	C	186	194	Right-handed alpha
Helix 44	AE8	C	212	220	Right-handed alpha
Helix 45	AE9	C	230	234	Right-handed 310
Helix 46	AF1	C	235	245	Right-handed alpha
Helix 47	AF2	C	263	269	Right-handed alpha
Helix 48	AF3	C	282	304	Right-handed alpha
Helix 49	AF4	D	13	20	Right-handed alpha
Helix 50	AF5	D	21	23	Right-handed 310
Helix 51	AF6	D	33	37	Right-handed 310
Helix 52	AF7	D	38	42	Right-handed 310
Helix 53	AF8	D	54	59	Right-handed alpha
Helix 54	AF9	D	78	85	Right-handed alpha
Helix 55	AG1	D	96	114	Right-handed alpha
Helix 56	AG2	D	114	124	Right-handed alpha
Helix 57	AG3	D	125	131	Right-handed alpha
Helix 58	AG4	D	151	163	Right-handed alpha
Helix 59	AG5	D	186	194	Right-handed alpha
Helix 60	AG6	D	212	220	Right-handed alpha
Helix 61	AG7	D	230	234	Right-handed 310
Helix 62	AG8	D	235	245	Right-handed alpha
Helix 63	AG9	D	263	269	Right-handed alpha
Helix 64	AH1	D	282	304	Right-handed alpha

There are 8 sheets in PDB entry 5J23. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	29	first strand
Strand 2	A	5	9	parallel
Strand 3	A	46	49	parallel
Strand 4	A	66	69	parallel
Strand 5	A	88	90	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	167	171	parallel
Strand 3	A	144	148	parallel
Strand 4	A	196	199	parallel
Strand 5	A	224	227	parallel
Strand 6	A	250	253	parallel
Strand 7	A	272	274	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	29	first strand
Strand 2	B	5	9	parallel
Strand 3	B	46	49	parallel
Strand 4	B	66	69	parallel
Strand 5	B	88	90	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	167	171	parallel
Strand 3	B	144	148	parallel
Strand 4	B	196	199	parallel
Strand 5	B	224	227	parallel
Strand 6	B	250	253	parallel
Strand 7	B	272	274	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	25	29	first strand
Strand 2	C	5	9	parallel
Strand 3	C	46	49	parallel
Strand 4	C	66	69	parallel
Strand 5	C	88	90	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	167	171	parallel
Strand 3	C	144	148	parallel
Strand 4	C	196	199	parallel
Strand 5	C	224	227	parallel
Strand 6	C	250	253	parallel
Strand 7	C	272	274	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	29	first strand
Strand 2	D	5	9	parallel
Strand 3	D	46	49	parallel
Strand 4	D	66	69	parallel
Strand 5	D	88	90	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	167	171	parallel
Strand 3	D	144	148	parallel
Strand 4	D	196	199	parallel
Strand 5	D	224	227	parallel
Strand 6	D	250	253	parallel
Strand 7	D	272	274	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J23

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J23