Analysis of interatomic Contacts of Structural Units in PDB entry:
5J32

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J32 entry

There are 4 chains in PDB entry 5J32 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 31	SER 399
B	SER 36	GLN 400
C	LYS 41	SER 396
D	PHE 38	HIS 260

There are 83 helices in PDB entry 5J32. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	71	Right-handed alpha
Helix 2	AA2	A	84	92	Right-handed alpha
Helix 3	AA3	A	96	105	Right-handed alpha
Helix 4	AA4	A	116	120	Right-handed 310
Helix 5	AA5	A	123	126	Right-handed 310
Helix 6	AA6	A	127	140	Right-handed alpha
Helix 7	AA7	A	151	158	Right-handed 310
Helix 8	AA8	A	161	166	Right-handed alpha
Helix 9	AA9	A	178	182	Right-handed 310
Helix 10	AB1	A	206	222	Right-handed alpha
Helix 11	AB2	A	236	250	Right-handed alpha
Helix 12	AB3	A	251	253	Right-handed 310
Helix 13	AB4	A	263	273	Right-handed alpha
Helix 14	AB5	A	274	277	Right-handed 310
Helix 15	AB6	A	283	299	Right-handed alpha
Helix 16	AB7	A	300	304	Right-handed 310
Helix 17	AB8	A	324	328	Right-handed 310
Helix 18	AB9	A	335	351	Right-handed alpha
Helix 19	AC1	A	352	369	Right-handed alpha
Helix 20	AC2	A	373	377	Right-handed 310
Helix 21	AC3	A	385	398	Right-handed alpha
Helix 22	AC4	B	53	71	Right-handed alpha
Helix 23	AC5	B	84	92	Right-handed alpha
Helix 24	AC6	B	96	106	Right-handed alpha
Helix 25	AC7	B	116	120	Right-handed 310
Helix 26	AC8	B	123	126	Right-handed 310
Helix 27	AC9	B	127	140	Right-handed alpha
Helix 28	AD1	B	151	158	Right-handed 310
Helix 29	AD2	B	161	166	Right-handed alpha
Helix 30	AD3	B	178	182	Right-handed 310
Helix 31	AD4	B	206	223	Right-handed alpha
Helix 32	AD5	B	236	250	Right-handed alpha
Helix 33	AD6	B	251	253	Right-handed 310
Helix 34	AD7	B	263	273	Right-handed alpha
Helix 35	AD8	B	274	277	Right-handed 310
Helix 36	AD9	B	283	299	Right-handed alpha
Helix 37	AE1	B	300	304	Right-handed 310
Helix 38	AE2	B	324	328	Right-handed 310
Helix 39	AE3	B	335	349	Right-handed alpha
Helix 40	AE4	B	352	369	Right-handed alpha
Helix 41	AE5	B	373	377	Right-handed 310
Helix 42	AE6	B	385	400	Right-handed alpha
Helix 43	AE7	C	53	71	Right-handed alpha
Helix 44	AE8	C	84	92	Right-handed alpha
Helix 45	AE9	C	96	105	Right-handed alpha
Helix 46	AF1	C	116	120	Right-handed 310
Helix 47	AF2	C	123	126	Right-handed 310
Helix 48	AF3	C	127	140	Right-handed alpha
Helix 49	AF4	C	151	158	Right-handed 310
Helix 50	AF5	C	161	166	Right-handed alpha
Helix 51	AF6	C	178	182	Right-handed 310
Helix 52	AF7	C	206	222	Right-handed alpha
Helix 53	AF8	C	236	250	Right-handed alpha
Helix 54	AF9	C	251	253	Right-handed 310
Helix 55	AG1	C	263	273	Right-handed alpha
Helix 56	AG2	C	274	277	Right-handed 310
Helix 57	AG3	C	283	299	Right-handed alpha
Helix 58	AG4	C	300	304	Right-handed 310
Helix 59	AG5	C	324	328	Right-handed 310
Helix 60	AG6	C	335	351	Right-handed alpha
Helix 61	AG7	C	352	369	Right-handed alpha
Helix 62	AG8	C	373	377	Right-handed 310
Helix 63	AG9	C	385	396	Right-handed alpha
Helix 64	AH1	D	53	71	Right-handed alpha
Helix 65	AH2	D	83	92	Right-handed alpha
Helix 66	AH3	D	96	105	Right-handed alpha
Helix 67	AH4	D	116	120	Right-handed 310
Helix 68	AH5	D	123	126	Right-handed 310
Helix 69	AH6	D	127	140	Right-handed alpha
Helix 70	AH7	D	151	158	Right-handed 310
Helix 71	AH8	D	161	166	Right-handed alpha
Helix 72	AH9	D	178	182	Right-handed 310
Helix 73	AI1	D	206	222	Right-handed alpha
Helix 74	AI2	D	236	251	Right-handed alpha
Helix 75	AI3	D	263	273	Right-handed alpha
Helix 76	AI4	D	274	277	Right-handed 310
Helix 77	AI5	D	283	299	Right-handed alpha
Helix 78	AI6	D	300	303	Right-handed 310
Helix 79	AI7	D	324	328	Right-handed 310
Helix 80	AI8	D	335	349	Right-handed alpha
Helix 81	AI9	D	352	369	Right-handed alpha
Helix 82	AJ1	D	373	377	Right-handed 310
Helix 83	AJ2	D	385	396	Right-handed alpha

There are 10 sheets in PDB entry 5J32. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	80	first strand
Strand 2	A	41	50	parallel
Strand 3	A	108	113	parallel
Strand 4	A	315	317	parallel
Strand 5	A	307	309	anti-parallel
Strand 6	A	143	149	anti-parallel
Strand 7	A	169	175	anti-parallel
Strand 8	A	279	282	parallel
Strand 9	A	226	231	parallel
Strand 10	A	257	262	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	190	first strand
Strand 2	A	196	205	anti-parallel
Strand 3	B	196	205	anti-parallel
Strand 4	B	187	190	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	382	383	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	80	first strand
Strand 2	B	41	50	parallel
Strand 3	B	108	113	parallel
Strand 4	B	315	317	parallel
Strand 5	B	307	309	anti-parallel
Strand 6	B	143	149	anti-parallel
Strand 7	B	169	175	anti-parallel
Strand 8	B	279	282	parallel
Strand 9	B	226	231	parallel
Strand 10	B	257	262	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	382	383	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	80	first strand
Strand 2	C	42	50	parallel
Strand 3	C	108	113	parallel
Strand 4	C	315	317	parallel
Strand 5	C	307	309	anti-parallel
Strand 6	C	143	149	anti-parallel
Strand 7	C	169	175	anti-parallel
Strand 8	C	279	282	parallel
Strand 9	C	226	231	parallel
Strand 10	C	257	262	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	190	first strand
Strand 2	C	196	205	anti-parallel
Strand 3	D	196	205	anti-parallel
Strand 4	D	187	190	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	372	first strand
Strand 2	C	382	383	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	43	50	parallel
Strand 3	D	108	113	parallel
Strand 4	D	315	319	parallel
Strand 5	D	305	309	anti-parallel
Strand 6	D	143	149	anti-parallel
Strand 7	D	169	175	anti-parallel
Strand 8	D	279	282	parallel
Strand 9	D	226	231	parallel
Strand 10	D	257	262	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	372	first strand
Strand 2	D	382	383	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J32

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J32