Analysis of interatomic Contacts of Structural Units in PDB entry:
5J36

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J36 entry

There are 5 chains in PDB entry 5J36 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	PHE 42	THR 247
A	PHE 42	THR 247
B	PHE 42	THR 247
C	PHE 42	THR 247
D	PHE 42	THR 247

There are 20 helices in PDB entry 5J36. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	80	86	Right-handed alpha
Helix 2	AA2	E	130	137	Right-handed 310
Helix 3	AA3	E	190	194	Right-handed 310
Helix 4	AA4	E	205	209	Right-handed 310
Helix 5	AA5	A	80	86	Right-handed alpha
Helix 6	AA6	A	130	137	Right-handed 310
Helix 7	AA7	A	190	194	Right-handed 310
Helix 8	AA8	A	205	209	Right-handed 310
Helix 9	AA9	B	80	86	Right-handed alpha
Helix 10	AB1	B	130	137	Right-handed 310
Helix 11	AB2	B	190	194	Right-handed 310
Helix 12	AB3	B	205	209	Right-handed 310
Helix 13	AB4	C	80	86	Right-handed alpha
Helix 14	AB5	C	130	137	Right-handed 310
Helix 15	AB6	C	190	194	Right-handed 310
Helix 16	AB7	C	205	209	Right-handed 310
Helix 17	AB8	D	80	86	Right-handed alpha
Helix 18	AB9	D	130	137	Right-handed 310
Helix 19	AC1	D	190	194	Right-handed 310
Helix 20	AC2	D	205	209	Right-handed 310

There are 28 sheets in PDB entry 5J36. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	60	first strand
Strand 2	E	225	240	anti-parallel
Strand 3	E	96	111	anti-parallel
Strand 4	E	162	166	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	60	first strand
Strand 2	E	225	240	anti-parallel
Strand 3	E	96	111	anti-parallel
Strand 4	E	196	197	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	79	first strand
Strand 2	E	211	219	anti-parallel
Strand 3	E	122	127	anti-parallel
Strand 4	E	154	157	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	79	first strand
Strand 2	E	211	219	anti-parallel
Strand 3	E	169	170	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	115	first strand
Strand 2	A	118	119	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	B	114	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	172	174	first strand
Strand 2	E	184	186	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	60	first strand
Strand 2	A	225	240	anti-parallel
Strand 3	A	96	111	anti-parallel
Strand 4	A	162	166	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	60	first strand
Strand 2	A	225	240	anti-parallel
Strand 3	A	96	111	anti-parallel
Strand 4	A	196	197	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	211	219	anti-parallel
Strand 3	A	122	127	anti-parallel
Strand 4	A	154	157	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	79	first strand
Strand 2	A	211	219	anti-parallel
Strand 3	A	169	170	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	C	118	119	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	184	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	60	first strand
Strand 2	B	225	240	anti-parallel
Strand 3	B	96	111	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	60	first strand
Strand 2	B	225	240	anti-parallel
Strand 3	B	96	111	anti-parallel
Strand 4	B	196	197	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	79	first strand
Strand 2	B	211	219	anti-parallel
Strand 3	B	122	127	anti-parallel
Strand 4	B	154	157	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	D	114	115	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	174	first strand
Strand 2	B	184	186	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	60	first strand
Strand 2	C	225	240	anti-parallel
Strand 3	C	96	111	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	60	first strand
Strand 2	C	225	240	anti-parallel
Strand 3	C	96	111	anti-parallel
Strand 4	C	196	197	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	79	first strand
Strand 2	C	211	219	anti-parallel
Strand 3	C	122	127	anti-parallel
Strand 4	C	154	157	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	79	first strand
Strand 2	C	211	219	anti-parallel
Strand 3	C	169	170	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	184	186	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	60	first strand
Strand 2	D	225	240	anti-parallel
Strand 3	D	96	111	anti-parallel
Strand 4	D	162	166	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	60	first strand
Strand 2	D	225	240	anti-parallel
Strand 3	D	96	111	anti-parallel
Strand 4	D	196	197	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	79	first strand
Strand 2	D	211	219	anti-parallel
Strand 3	D	122	127	anti-parallel
Strand 4	D	154	157	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	79	first strand
Strand 2	D	211	219	anti-parallel
Strand 3	D	169	170	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	184	186	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J36

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J36