Analysis of interatomic Contacts of Structural Units in PDB entry:
5J39


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J39 entry

There are 2 chains in PDB entry 5J39 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 300GLU 497
B
 GLY 300GLU 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5J39. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
327 345Right-handed alpha
Helix 2
AA2
A
398 402Right-handed 310
Helix 3
AA3
A
406 411Right-handed 310
Helix 4
AA4
A
432 444Right-handed alpha
Helix 5
AA5
A
482 489Right-handed alpha
Helix 6
AA6
B
327 345Right-handed alpha
Helix 7
AA7
B
398 402Right-handed 310
Helix 8
AA8
B
406 410Right-handed 310
Helix 9
AA9
B
432 444Right-handed alpha
Helix 10
AB1
B
482 489Right-handed alpha
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There are 6 sheets in PDB entry 5J39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 481first strand
Strand 2
A
464 473anti-parallel
Strand 3
A
451 461anti-parallel
Strand 4
A
307 317anti-parallel
Strand 5
A
320 325anti-parallel
Strand 6
A
417 421anti-parallel
Strand 7
A
464 473parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
370 378anti-parallel
Strand 4
A
359 363anti-parallel
Strand 5
A
403 404anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 426first strand
Strand 2
A
492 494anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 481first strand
Strand 2
B
466 473anti-parallel
Strand 3
B
451 459anti-parallel
Strand 4
B
307 317anti-parallel
Strand 5
B
320 325anti-parallel
Strand 6
B
417 421anti-parallel
Strand 7
B
466 473parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 397first strand
Strand 2
B
384 388anti-parallel
Strand 3
B
370 378anti-parallel
Strand 4
B
359 363anti-parallel
Strand 5
B
403 404anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 426first strand
Strand 2
B
492 494anti-parallel
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