Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3E entry

There are 10 chains in PDB entry 5J3E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 53PRO 224
B
 SER 54PRO 224
C
 G 1 A 5
C
 G 7 C 12
D
 G 1 A 5
D
 G 7 C 12
E
 G 1 A 5
E
 G 7 C 12
F
 G 1 A 5
F
 G 7 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5J3E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 83Right-handed alpha
Helix 2
AA2
A
95 105Right-handed alpha
Helix 3
AA3
A
137 141Right-handed 310
Helix 4
AA4
A
175 189Right-handed alpha
Helix 5
AA5
A
195 200Right-handed alpha
Helix 6
AA6
A
209 220Right-handed alpha
Helix 7
AA7
B
76 82Right-handed alpha
Helix 8
AA8
B
83 85Right-handed 310
Helix 9
AA9
B
95 105Right-handed alpha
Helix 10
AB1
B
137 141Right-handed 310
Helix 11
AB2
B
175 189Right-handed alpha
Helix 12
AB3
B
190 194Right-handed 310
Helix 13
AB4
B
195 200Right-handed alpha
Helix 14
AB5
B
209 220Right-handed alpha
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There are 4 sheets in PDB entry 5J3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
159 174anti-parallel
Strand 3
A
122 135anti-parallel
Strand 4
A
110 115anti-parallel
Strand 5
A
56 61parallel
Strand 6
A
205 208anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
71 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
159 174anti-parallel
Strand 3
B
122 135anti-parallel
Strand 4
B
110 115anti-parallel
Strand 5
B
56 61parallel
Strand 6
B
205 208anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
71 72anti-parallel
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