Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3N entry

There are 4 chains in PDB entry 5J3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6PHE 70
A
 VAL 74ILE 398
B
 HIS 7PHE 70
B
 VAL 74GLY 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5J3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 15Right-handed 310
Helix 2
AA2
A
62 67Right-handed 310
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
81 87Right-handed 310
Helix 5
AA5
A
88 93Right-handed alpha
Helix 6
AA6
A
244 260Right-handed alpha
Helix 7
AA7
A
269 281Right-handed alpha
Helix 8
AA8
A
284 286Right-handed 310
Helix 9
AA9
A
287 297Right-handed alpha
Helix 10
AB1
A
305 332Right-handed alpha
Helix 11
AB2
A
335 350Right-handed alpha
Helix 12
AB3
A
359 363Right-handed 310
Helix 13
AB4
A
375 392Right-handed alpha
Helix 14
AB5
B
9 15Right-handed 310
Helix 15
AB6
B
62 67Right-handed 310
Helix 16
AB7
B
74 78Right-handed 310
Helix 17
AB8
B
81 87Right-handed 310
Helix 18
AB9
B
88 93Right-handed alpha
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There are 2 sheets in PDB entry 5J3N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 28first strand
Strand 2
A
31 42anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
223 233anti-parallel
Strand 5
A
205 214anti-parallel
Strand 6
A
154 161anti-parallel
Strand 7
A
166 176anti-parallel
Strand 8
A
182 193anti-parallel
Strand 9
A
98 106anti-parallel
Strand 10
A
111 121anti-parallel
Strand 11
A
124 134anti-parallel
Strand 12
A
17 28parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 28first strand
Strand 2
B
31 42anti-parallel
Strand 3
B
47 54anti-parallel
Strand 4
B
223 233anti-parallel
Strand 5
B
205 214anti-parallel
Strand 6
B
154 161anti-parallel
Strand 7
B
166 176anti-parallel
Strand 8
B
182 193anti-parallel
Strand 9
B
98 106anti-parallel
Strand 10
B
111 121anti-parallel
Strand 11
B
124 134anti-parallel
Strand 12
B
17 28parallel
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