Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3P entry

There are 2 chains in PDB entry 5J3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 112ILE 361
B
 HIS 112ILE 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5J3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
128 144Right-handed alpha
Helix 2
AA2
A
154 165Right-handed alpha
Helix 3
AA3
A
233 250Right-handed alpha
Helix 4
AA4
A
268 273Right-handed alpha
Helix 5
AA5
A
283 287Right-handed alpha
Helix 6
AA6
B
128 144Right-handed alpha
Helix 7
AA7
B
154 165Right-handed alpha
Helix 8
AA8
B
234 250Right-handed alpha
Helix 9
AA9
B
282 287Right-handed alpha
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There are 6 sheets in PDB entry 5J3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
179 185anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
113 120parallel
Strand 5
A
353 360anti-parallel
Strand 6
A
329 337anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 198first strand
Strand 2
A
207 215anti-parallel
Strand 3
A
218 224anti-parallel
Strand 4
A
256 262parallel
Strand 5
A
316 321anti-parallel
Strand 6
A
281 282anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
312 313anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 172first strand
Strand 2
B
179 185anti-parallel
Strand 3
B
147 153anti-parallel
Strand 4
B
115 120parallel
Strand 5
B
353 360anti-parallel
Strand 6
B
329 337anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 198first strand
Strand 2
B
207 215anti-parallel
Strand 3
B
218 224anti-parallel
Strand 4
B
256 262parallel
Strand 5
B
316 319anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 298first strand
Strand 2
B
312 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il