Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3U entry

There is 1 chain in PDB entry 5J3U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 145TYR 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5J3U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 163Right-handed alpha
Helix 2
AA2
A
164 167Right-handed 310
Helix 3
AA3
A
170 181Right-handed alpha
Helix 4
AA4
A
234 240Right-handed alpha
Helix 5
AA5
A
260 267Right-handed alpha
Helix 6
AA6
A
267 283Right-handed alpha
Helix 7
AA7
A
284 289Right-handed 310
Helix 8
AA8
A
292 302Right-handed alpha
Helix 9
AA9
A
358 364Right-handed alpha
Helix 10
AB1
A
384 391Right-handed alpha
Helix 11
AB2
A
393 402Right-handed alpha
Helix 12
AB3
A
403 405Right-handed 310
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There are 4 sheets in PDB entry 5J3U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
253 259anti-parallel
Strand 3
A
201 207anti-parallel
Strand 4
A
231 232anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
246 249anti-parallel
Strand 3
A
210 216anti-parallel
Strand 4
A
219 226anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
370 383anti-parallel
Strand 3
A
323 336anti-parallel
Strand 4
A
345 350anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
370 383anti-parallel
Strand 3
A
323 336anti-parallel
Strand 4
A
355 356anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il