Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3V entry

There are 4 chains in PDB entry 5J3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 8TYR 888
C
 THR 11LYS 27
B
 ASP 26GLY 889
D
 THR 11LYS 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are113 helices in PDB entry 5J3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
26 40Right-handed alpha
Helix 3
AA3
A
46 56Right-handed alpha
Helix 4
AA4
A
61 75Right-handed alpha
Helix 5
AA5
A
84 98Right-handed alpha
Helix 6
AA6
A
103 118Right-handed alpha
Helix 7
AA7
A
129 134Right-handed alpha
Helix 8
AA8
A
141 159Right-handed alpha
Helix 9
AA9
A
170 173Right-handed 310
Helix 10
AB1
A
174 182Right-handed alpha
Helix 11
AB2
A
183 185Right-handed 310
Helix 12
AB3
A
187 200Right-handed alpha
Helix 13
AB4
A
206 211Right-handed alpha
Helix 14
AB5
A
212 223Right-handed alpha
Helix 15
AB6
A
224 226Right-handed 310
Helix 16
AB7
A
228 246Right-handed alpha
Helix 17
AB8
A
247 250Right-handed 310
Helix 18
AB9
A
253 265Right-handed alpha
Helix 19
AC1
A
269 284Right-handed alpha
Helix 20
AC2
A
288 307Right-handed alpha
Helix 21
AC3
A
313 318Right-handed alpha
Helix 22
AC4
A
374 391Right-handed alpha
Helix 23
AC5
A
394 407Right-handed alpha
Helix 24
AC6
A
410 424Right-handed alpha
Helix 25
AC7
A
428 433Right-handed alpha
Helix 26
AC8
A
435 447Right-handed alpha
Helix 27
AC9
A
451 464Right-handed alpha
Helix 28
AD1
A
465 472Right-handed alpha
Helix 29
AD2
A
477 490Right-handed alpha
Helix 30
AD3
A
493 512Right-handed alpha
Helix 31
AD4
A
513 516Right-handed 310
Helix 32
AD5
A
518 529Right-handed alpha
Helix 33
AD6
A
537 553Right-handed alpha
Helix 34
AD7
A
554 557Right-handed 310
Helix 35
AD8
A
558 576Right-handed alpha
Helix 36
AD9
A
582 598Right-handed alpha
Helix 37
AE1
A
599 603Right-handed 310
Helix 38
AE2
A
604 629Right-handed alpha
Helix 39
AE3
A
637 656Right-handed alpha
Helix 40
AE4
A
659 664Right-handed alpha
Helix 41
AE5
A
667 676Right-handed alpha
Helix 42
AE6
A
680 698Right-handed alpha
Helix 43
AE7
A
698 703Right-handed alpha
Helix 44
AE8
A
705 716Right-handed alpha
Helix 45
AE9
A
721 740Right-handed alpha
Helix 46
AF1
A
741 746Right-handed 310
Helix 47
AF2
A
747 760Right-handed alpha
Helix 48
AF3
A
764 782Right-handed alpha
Helix 49
AF4
A
783 788Right-handed 310
Helix 50
AF5
A
789 802Right-handed alpha
Helix 51
AF6
A
807 818Right-handed alpha
Helix 52
AF7
A
818 823Right-handed alpha
Helix 53
AF8
A
825 830Right-handed alpha
Helix 54
AF9
A
831 840Right-handed alpha
Helix 55
AG1
A
846 865Right-handed alpha
Helix 56
AG2
A
865 874Right-handed alpha
Helix 57
AG3
A
877 888Right-handed alpha
Helix 58
AG4
C
20 27Right-handed alpha
Helix 59
AG5
B
33 38Right-handed alpha
Helix 60
AG6
B
39 43Right-handed 310
Helix 61
AG7
B
61 76Right-handed alpha
Helix 62
AG8
B
88 97Right-handed alpha
Helix 63
AG9
B
103 110Right-handed alpha
Helix 64
AH1
B
129 134Right-handed alpha
Helix 65
AH2
B
141 157Right-handed alpha
Helix 66
AH3
B
179 183Right-handed 310
Helix 67
AH4
B
187 199Right-handed alpha
Helix 68
AH5
B
200 202Right-handed 310
Helix 69
AH6
B
206 211Right-handed alpha
Helix 70
AH7
B
213 218Right-handed alpha
Helix 71
AH8
B
228 245Right-handed alpha
Helix 72
AH9
B
246 250Right-handed 310
Helix 73
AI1
B
254 265Right-handed alpha
Helix 74
AI2
B
269 283Right-handed alpha
Helix 75
AI3
B
299 308Right-handed alpha
Helix 76
AI4
B
311 318Right-handed alpha
Helix 77
AI5
B
374 388Right-handed alpha
Helix 78
AI6
B
390 397Right-handed 310
Helix 79
AI7
B
398 407Right-handed alpha
Helix 80
AI8
B
410 424Right-handed alpha
Helix 81
AI9
B
428 433Right-handed alpha
Helix 82
AJ1
B
435 446Right-handed alpha
Helix 83
AJ2
B
447 449Right-handed 310
Helix 84
AJ3
B
451 465Right-handed alpha
Helix 85
AJ4
B
465 470Right-handed alpha
Helix 86
AJ5
B
477 490Right-handed alpha
Helix 87
AJ6
B
493 512Right-handed alpha
Helix 88
AJ7
B
513 517Right-handed 310
Helix 89
AJ8
B
518 533Right-handed alpha
Helix 90
AJ9
B
537 553Right-handed alpha
Helix 91
AK1
B
554 557Right-handed 310
Helix 92
AK2
B
558 575Right-handed alpha
Helix 93
AK3
B
582 598Right-handed alpha
Helix 94
AK4
B
599 603Right-handed 310
Helix 95
AK5
B
604 629Right-handed alpha
Helix 96
AK6
B
638 656Right-handed alpha
Helix 97
AK7
B
659 666Right-handed alpha
Helix 98
AK8
B
667 676Right-handed alpha
Helix 99
AK9
B
680 698Right-handed alpha
Helix 100
AL1
B
698 703Right-handed alpha
Helix 101
AL2
B
705 716Right-handed alpha
Helix 102
AL3
B
721 740Right-handed alpha
Helix 103
AL4
B
741 746Right-handed 310
Helix 104
AL5
B
747 759Right-handed alpha
Helix 105
AL6
B
764 782Right-handed alpha
Helix 106
AL7
B
782 787Right-handed alpha
Helix 107
AL8
B
789 801Right-handed alpha
Helix 108
AL9
B
807 822Right-handed alpha
Helix 109
AM1
B
828 830Right-handed 310
Helix 110
AM2
B
831 840Right-handed alpha
Helix 111
AM3
B
846 873Right-handed alpha
Helix 112
AM4
B
874 876Right-handed 310
Helix 113
AM5
D
20 26Right-handed alpha
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