Analysis of interatomic Contacts of Structural Units in PDB entry:
5J3Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J3Z entry

There are 2 chains in PDB entry 5J3Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 122LEU 370
B
 SER 121LEU 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5J3Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 154Right-handed alpha
Helix 2
AA2
A
164 175Right-handed alpha
Helix 3
AA3
A
240 242Right-handed 310
Helix 4
AA4
A
243 261Right-handed alpha
Helix 5
AA5
A
278 284Right-handed alpha
Helix 6
AA6
A
293 297Right-handed alpha
Helix 7
AA7
A
300 304Right-handed 310
Helix 8
AA8
B
138 154Right-handed alpha
Helix 9
AA9
B
164 175Right-handed alpha
Helix 10
AB1
B
240 242Right-handed 310
Helix 11
AB2
B
243 261Right-handed alpha
Helix 12
AB3
B
276 284Right-handed alpha
Helix 13
AB4
B
293 297Right-handed alpha
Helix 14
AB5
B
300 304Right-handed 310
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There are 6 sheets in PDB entry 5J3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
189 195anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
123 130parallel
Strand 5
A
361 368anti-parallel
Strand 6
A
337 345anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 208first strand
Strand 2
A
217 225anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
266 272parallel
Strand 5
A
326 331anti-parallel
Strand 6
A
291 292anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
322 323anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
189 195anti-parallel
Strand 3
B
157 163anti-parallel
Strand 4
B
122 130parallel
Strand 5
B
361 368anti-parallel
Strand 6
B
337 345anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 208first strand
Strand 2
B
217 225anti-parallel
Strand 3
B
228 234anti-parallel
Strand 4
B
266 272parallel
Strand 5
B
326 331anti-parallel
Strand 6
B
290 292anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
322 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il