Analysis of interatomic Contacts of Structural Units in PDB entry:
5J44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J44 entry

There are 2 chains in PDB entry 5J44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	THR 1006
B	ALA 1	ASP 333

There are 19 helices in PDB entry 5J44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	18	Right-handed alpha
Helix 2	AA2	A	196	200	Right-handed 310
Helix 3	AA3	A	245	250	Right-handed alpha
Helix 4	AA4	A	250	256	Right-handed alpha
Helix 5	AA5	A	299	303	Right-handed 310
Helix 6	AA6	A	432	434	Right-handed 310
Helix 7	AA7	A	484	488	Right-handed 310
Helix 8	AA8	A	543	559	Right-handed alpha
Helix 9	AA9	A	846	851	Right-handed alpha
Helix 10	AB1	B	8	18	Right-handed alpha
Helix 11	AB2	B	196	200	Right-handed 310
Helix 12	AB3	B	245	250	Right-handed alpha
Helix 13	AB4	B	250	256	Right-handed alpha
Helix 14	AB5	B	299	303	Right-handed 310
Helix 15	AB6	B	432	434	Right-handed 310
Helix 16	AB7	B	484	488	Right-handed 310
Helix 17	AB8	B	528	532	Right-handed 310
Helix 18	AB9	B	543	560	Right-handed alpha
Helix 19	AC1	B	846	851	Right-handed alpha

There are 31 sheets in PDB entry 5J44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	152	154	parallel
Strand 3	A	160	162	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	38	42	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	72	75	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	93	101	anti-parallel
Strand 5	A	84	86	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	140	147	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	224	234	anti-parallel
Strand 5	A	239	243	anti-parallel
Strand 6	A	186	189	anti-parallel
Strand 7	A	179	181	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	306	309	parallel
Strand 3	A	327	330	parallel
Strand 4	A	348	351	parallel
Strand 5	A	368	372	parallel
Strand 6	A	388	391	parallel
Strand 7	A	413	416	parallel
Strand 8	A	436	438	parallel
Strand 9	A	458	459	parallel

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There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	280	285	anti-parallel
Strand 3	A	270	275	anti-parallel
Strand 4	A	313	317	parallel
Strand 5	A	334	338	parallel
Strand 6	A	356	360	parallel
Strand 7	A	376	379	parallel
Strand 8	A	395	398	parallel
Strand 9	A	422	425	parallel
Strand 10	A	443	446	parallel
Strand 11	A	464	467	parallel
Strand 12	A	568	570	parallel
Strand 13	A	592	593	parallel
Strand 14	A	630	640	parallel
Strand 15	A	598	602	parallel
Strand 16	A	573	577	parallel
Strand 17	A	474	478	parallel
Strand 18	A	452	454	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	640	first strand
Strand 2	A	650	659	parallel
Strand 3	A	700	708	parallel
Strand 4	A	718	726	parallel
Strand 5	A	737	746	parallel
Strand 6	A	757	760	parallel
Strand 7	A	777	780	parallel
Strand 8	A	809	812	parallel
Strand 9	A	830	833	parallel
Strand 10	A	863	873	parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	873	first strand
Strand 2	A	822	823	parallel
Strand 3	A	802	804	parallel
Strand 4	A	770	772	parallel
Strand 5	A	749	752	parallel
Strand 6	A	729	732	parallel
Strand 7	A	712	715	parallel
Strand 8	A	663	666	parallel
Strand 9	A	643	646	parallel
Strand 10	A	605	608	parallel
Strand 11	A	585	588	parallel
Strand 12	A	563	565	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	863	873	first strand
Strand 2	A	883	891	parallel
Strand 3	A	905	914	parallel
Strand 4	A	929	937	parallel
Strand 5	A	957	963	parallel
Strand 6	A	995	1005	anti-parallel
Strand 7	A	981	990	anti-parallel
Strand 8	A	976	978	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	746	first strand
Strand 2	A	764	766	parallel
Strand 3	A	795	799	parallel
Strand 4	A	816	819	parallel
Strand 5	A	857	859	parallel
Strand 6	A	876	878	parallel
Strand 7	A	894	896	parallel
Strand 8	A	917	922	parallel
Strand 9	A	941	947	parallel
Strand 10	A	971	973	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	321	322	first strand
Strand 2	A	344	345	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	507	510	parallel
Strand 3	A	515	519	anti-parallel
Strand 4	A	537	540	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	523	524	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	612	first strand
Strand 2	A	627	628	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	674	first strand
Strand 2	A	685	689	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	152	154	parallel
Strand 3	B	160	162	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	38	42	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	72	75	anti-parallel
Strand 3	B	108	112	anti-parallel
Strand 4	B	93	101	anti-parallel
Strand 5	B	84	86	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	140	147	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	224	234	anti-parallel
Strand 5	B	239	243	anti-parallel
Strand 6	B	186	189	anti-parallel
Strand 7	B	179	181	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	306	309	parallel
Strand 3	B	327	330	parallel
Strand 4	B	348	351	parallel
Strand 5	B	368	372	parallel
Strand 6	B	388	391	parallel
Strand 7	B	413	416	parallel
Strand 8	B	436	438	parallel
Strand 9	B	458	459	parallel

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There are 18 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	293	first strand
Strand 2	B	280	285	anti-parallel
Strand 3	B	270	275	anti-parallel
Strand 4	B	313	317	parallel
Strand 5	B	334	338	parallel
Strand 6	B	356	360	parallel
Strand 7	B	376	379	parallel
Strand 8	B	395	398	parallel
Strand 9	B	422	425	parallel
Strand 10	B	443	446	parallel
Strand 11	B	464	467	parallel
Strand 12	B	568	570	parallel
Strand 13	B	592	593	parallel
Strand 14	B	630	640	parallel
Strand 15	B	598	602	parallel
Strand 16	B	573	577	parallel
Strand 17	B	474	478	parallel
Strand 18	B	452	454	parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	640	first strand
Strand 2	B	650	659	parallel
Strand 3	B	700	708	parallel
Strand 4	B	718	726	parallel
Strand 5	B	737	746	parallel
Strand 6	B	757	760	parallel
Strand 7	B	777	780	parallel
Strand 8	B	809	812	parallel
Strand 9	B	830	833	parallel
Strand 10	B	863	873	parallel

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There are 12 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	873	first strand
Strand 2	B	822	823	parallel
Strand 3	B	802	804	parallel
Strand 4	B	770	772	parallel
Strand 5	B	749	752	parallel
Strand 6	B	729	732	parallel
Strand 7	B	712	715	parallel
Strand 8	B	663	666	parallel
Strand 9	B	643	646	parallel
Strand 10	B	605	608	parallel
Strand 11	B	585	588	parallel
Strand 12	B	563	565	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	863	873	first strand
Strand 2	B	883	891	parallel
Strand 3	B	905	914	parallel
Strand 4	B	929	937	parallel
Strand 5	B	957	962	parallel
Strand 6	B	996	1005	anti-parallel
Strand 7	B	981	990	anti-parallel
Strand 8	B	976	978	anti-parallel

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There are 10 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	746	first strand
Strand 2	B	764	766	parallel
Strand 3	B	795	799	parallel
Strand 4	B	816	819	parallel
Strand 5	B	857	859	parallel
Strand 6	B	876	877	parallel
Strand 7	B	894	895	parallel
Strand 8	B	917	922	parallel
Strand 9	B	941	947	parallel
Strand 10	B	971	973	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	344	345	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	507	510	parallel
Strand 3	B	515	519	anti-parallel
Strand 4	B	537	540	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	523	524	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	612	first strand
Strand 2	B	627	628	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	674	first strand
Strand 2	B	685	689	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	791	792	first strand
Strand 2	B	842	843	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J44

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J44