Analysis of interatomic Contacts of Structural Units in PDB entry:
5J47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J47 entry

There is 1 chain in PDB entry 5J47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 266ASP 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5J47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
270 281Right-handed alpha
Helix 2
AA2
A
285 295Right-handed alpha
Helix 3
AA3
A
299 302Right-handed 310
Helix 4
AA4
A
303 309Right-handed alpha
Helix 5
AA5
A
311 316Right-handed alpha
Helix 6
AA6
A
317 330Right-handed alpha
Helix 7
AA7
A
333 356Right-handed alpha
Helix 8
AA8
A
357 377Right-handed alpha
Helix 9
AA9
A
384 399Right-handed alpha
Helix 10
AB1
A
401 416Right-handed alpha
Helix 11
AB2
A
432 445Right-handed alpha
Helix 12
AB3
A
454 463Right-handed alpha
Helix 13
AB4
A
464 466Right-handed 310
Helix 14
AB5
A
481 485Right-handed 310
Helix 15
AB6
A
490 496Right-handed alpha
Helix 16
AB7
A
498 504Right-handed alpha
Helix 17
AB8
A
535 540Right-handed alpha
Helix 18
AB9
A
551 560Right-handed alpha
Helix 19
AC1
A
562 567Right-handed alpha
Helix 20
AC2
A
572 584Right-handed alpha
Helix 21
AC3
A
585 589Right-handed 310
Helix 22
AC4
A
590 592Right-handed 310
Helix 23
AC5
A
593 608Right-handed alpha
Helix 24
AC6
A
609 622Right-handed alpha
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There are 2 sheets in PDB entry 5J47. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 449first strand
Strand 2
A
471 476parallel
Strand 3
A
525 529parallel
Strand 4
A
422 426parallel
Strand 5
A
544 547parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
518 520anti-parallel
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