Analysis of interatomic Contacts of Structural Units in PDB entry:
5J48


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J48 entry

There are 2 chains in PDB entry 5J48 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 217TYR 351
B
 GLY 217LEU 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5J48. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
218 233Right-handed alpha
Helix 2
AA2
A
234 239Right-handed alpha
Helix 3
AA3
A
241 252Right-handed alpha
Helix 4
AA4
A
307 311Right-handed 310
Helix 5
AA5
A
333 340Right-handed alpha
Helix 6
AA6
A
343 348Right-handed alpha
Helix 7
AA7
B
218 233Right-handed alpha
Helix 8
AA8
B
234 239Right-handed alpha
Helix 9
AA9
B
241 252Right-handed alpha
Helix 10
AB1
B
307 311Right-handed 310
Helix 11
AB2
B
333 340Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5J48. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
326 332anti-parallel
Strand 3
A
272 278anti-parallel
Strand 4
A
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 264first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
281 285anti-parallel
Strand 4
A
294 299anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 257first strand
Strand 2
B
326 332anti-parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
304 305anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
319 322anti-parallel
Strand 3
B
281 285anti-parallel
Strand 4
B
294 299anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il