Analysis of interatomic Contacts of Structural Units in PDB entry:
5J49


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J49 entry

There are 2 chains in PDB entry 5J49 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2GLY 293
B
 LEU 2GLY 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5J49. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
26 29Right-handed 310
Helix 4
AA4
A
37 48Right-handed alpha
Helix 5
AA5
A
60 69Right-handed alpha
Helix 6
AA6
A
71 81Right-handed alpha
Helix 7
AA7
A
83 92Right-handed alpha
Helix 8
AA8
A
110 118Right-handed alpha
Helix 9
AA9
A
118 123Right-handed alpha
Helix 10
AB1
A
141 154Right-handed alpha
Helix 11
AB2
A
164 170Right-handed 310
Helix 12
AB3
A
194 198Right-handed 310
Helix 13
AB4
A
212 221Right-handed alpha
Helix 14
AB5
A
230 240Right-handed alpha
Helix 15
AB6
A
258 271Right-handed alpha
Helix 16
AB7
A
276 287Right-handed alpha
Helix 17
AB8
B
15 19Right-handed 310
Helix 18
AB9
B
20 24Right-handed 310
Helix 19
AC1
B
26 29Right-handed 310
Helix 20
AC2
B
37 48Right-handed alpha
Helix 21
AC3
B
60 69Right-handed alpha
Helix 22
AC4
B
71 81Right-handed alpha
Helix 23
AC5
B
84 92Right-handed alpha
Helix 24
AC6
B
110 118Right-handed alpha
Helix 25
AC7
B
118 123Right-handed alpha
Helix 26
AC8
B
141 154Right-handed alpha
Helix 27
AC9
B
164 170Right-handed 310
Helix 28
AD1
B
194 198Right-handed 310
Helix 29
AD2
B
212 221Right-handed alpha
Helix 30
AD3
B
230 240Right-handed alpha
Helix 31
AD4
B
258 271Right-handed alpha
Helix 32
AD5
B
276 287Right-handed alpha
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There are 5 sheets in PDB entry 5J49. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 20 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 210first strand
Strand 2
A
156 162anti-parallel
Strand 3
A
244 248parallel
Strand 4
A
183 191anti-parallel
Strand 5
A
172 178anti-parallel
Strand 6
A
202 210anti-parallel
Strand 7
A
127 130anti-parallel
Strand 8
A
6 11parallel
Strand 9
A
52 57parallel
Strand 10
A
99 104parallel
Strand 11
B
99 104anti-parallel
Strand 12
B
52 57parallel
Strand 13
B
6 11parallel
Strand 14
B
127 130parallel
Strand 15
B
202 210anti-parallel
Strand 16
B
172 180anti-parallel
Strand 17
B
183 191anti-parallel
Strand 18
B
244 248anti-parallel
Strand 19
B
156 162parallel
Strand 20
B
202 210anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
35 36anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
252 255anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
35 36anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
252 255anti-parallel
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