Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J4A entry

There are 4 chains in PDB entry 5J4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 201LYS 316
B
 ALA 2GLY 105
C
 ARG 201LYS 316
D
 ALA 2GLY 105
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5J4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 216Right-handed alpha
Helix 2
AA2
A
250 279Right-handed alpha
Helix 3
AA3
A
285 289Right-handed 310
Helix 4
AA4
A
290 302Right-handed alpha
Helix 5
AA5
A
305 310Right-handed alpha
Helix 6
AA6
B
16 29Right-handed alpha
Helix 7
AA7
B
30 31Right-handed 310
Helix 8
AA8
B
32 34Right-handed 310
Helix 9
AA9
B
35 48Right-handed alpha
Helix 10
AB1
B
60 80Right-handed alpha
Helix 11
AB2
B
83 100Right-handed alpha
Helix 12
AB3
B
101 105Right-handed 310
Helix 13
AB4
C
202 216Right-handed alpha
Helix 14
AB5
C
250 260Right-handed alpha
Helix 15
AB6
C
260 279Right-handed alpha
Helix 16
AB7
C
285 289Right-handed 310
Helix 17
AB8
C
290 303Right-handed alpha
Helix 18
AB9
C
305 310Right-handed alpha
Helix 19
AC1
D
16 30Right-handed alpha
Helix 20
AC2
D
31 34Right-handed 310
Helix 21
AC3
D
35 43Right-handed alpha
Helix 22
AC4
D
43 48Right-handed alpha
Helix 23
AC5
D
60 79Right-handed alpha
Helix 24
AC6
D
83 100Right-handed alpha
Helix 25
AC7
D
101 105Right-handed 310
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There are 6 sheets in PDB entry 5J4A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 221first strand
Strand 2
A
230 232anti-parallel
Strand 3
A
241 242anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
312 314parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 15first strand
Strand 2
B
3 8anti-parallel
Strand 3
B
53 55parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
219 221first strand
Strand 2
C
230 232anti-parallel
Strand 3
C
241 242anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
282 284first strand
Strand 2
C
312 314parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
3 8anti-parallel
Strand 3
D
53 55parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il