Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J4I entry

There are 2 chains in PDB entry 5J4I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5PRO 441
B
 ALA 5PRO 441
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5J4I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
11 25Right-handed alpha
Helix 3
AA3
A
26 29Right-handed 310
Helix 4
AA4
A
30 36Right-handed alpha
Helix 5
AA5
A
37 38Right-handed 310
Helix 6
AA6
A
39 40Right-handed 310
Helix 7
AA7
A
41 67Right-handed alpha
Helix 8
AA8
A
72 82Right-handed alpha
Helix 9
AA9
A
82 113Right-handed alpha
Helix 10
AB1
A
114 115Right-handed 310
Helix 11
AB2
A
116 120Right-handed 310
Helix 12
AB3
A
121 143Right-handed alpha
Helix 13
AB4
A
143 169Right-handed alpha
Helix 14
AB5
A
170 172Right-handed 310
Helix 15
AB6
A
174 181Right-handed alpha
Helix 16
AB7
A
188 201Right-handed alpha
Helix 17
AB8
A
202 205Right-handed 310
Helix 18
AB9
A
208 213Right-handed alpha
Helix 19
AC1
A
214 217Right-handed 310
Helix 20
AC2
A
219 250Right-handed alpha
Helix 21
AC3
A
251 258Right-handed alpha
Helix 22
AC4
A
262 270Right-handed alpha
Helix 23
AC5
A
271 307Right-handed alpha
Helix 24
AC6
A
311 316Right-handed 310
Helix 25
AC7
A
323 339Right-handed alpha
Helix 26
AC8
A
340 342Right-handed 310
Helix 27
AC9
A
343 361Right-handed alpha
Helix 28
AD1
A
361 377Right-handed alpha
Helix 29
AD2
A
378 382Right-handed 310
Helix 30
AD3
A
383 404Right-handed alpha
Helix 31
AD4
A
406 429Right-handed alpha
Helix 32
AD5
B
11 25Right-handed alpha
Helix 33
AD6
B
26 29Right-handed 310
Helix 34
AD7
B
30 36Right-handed alpha
Helix 35
AD8
B
41 67Right-handed alpha
Helix 36
AD9
B
72 82Right-handed alpha
Helix 37
AE1
B
82 100Right-handed alpha
Helix 38
AE2
B
100 113Right-handed alpha
Helix 39
AE3
B
114 115Right-handed 310
Helix 40
AE4
B
116 120Right-handed 310
Helix 41
AE5
B
121 143Right-handed alpha
Helix 42
AE6
B
143 169Right-handed alpha
Helix 43
AE7
B
170 172Right-handed 310
Helix 44
AE8
B
174 181Right-handed alpha
Helix 45
AE9
B
188 201Right-handed alpha
Helix 46
AF1
B
202 205Right-handed 310
Helix 47
AF2
B
208 213Right-handed alpha
Helix 48
AF3
B
214 217Right-handed 310
Helix 49
AF4
B
219 250Right-handed alpha
Helix 50
AF5
B
251 258Right-handed alpha
Helix 51
AF6
B
262 270Right-handed alpha
Helix 52
AF7
B
271 307Right-handed alpha
Helix 53
AF8
B
311 316Right-handed 310
Helix 54
AF9
B
323 339Right-handed alpha
Helix 55
AG1
B
340 342Right-handed 310
Helix 56
AG2
B
343 361Right-handed alpha
Helix 57
AG3
B
361 377Right-handed alpha
Helix 58
AG4
B
378 382Right-handed 310
Helix 59
AG5
B
383 404Right-handed alpha
Helix 60
AG6
B
406 429Right-handed alpha
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There are no sheets in PDB entry 5J4I
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