Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J4L entry

There is 1 chain in PDB entry 5J4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 108ASP 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5J4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
117 124Right-handed alpha
Helix 2
AA2
A
143 155Right-handed alpha
Helix 3
AA3
A
156 157Right-handed 310
Helix 4
AA4
A
158 162Right-handed 310
Helix 5
AA5
A
178 189Right-handed alpha
Helix 6
AA6
A
192 199Right-handed alpha
Helix 7
AA7
A
207 226Right-handed alpha
Helix 8
AA8
A
241 248Right-handed alpha
Helix 9
AA9
A
252 276Right-handed alpha
Helix 10
AB1
A
319 321Right-handed 310
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There are 2 sheets in PDB entry 5J4L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
128 129anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 204first strand
Strand 2
A
167 172parallel
Strand 3
A
232 238parallel
Strand 4
A
278 284parallel
Strand 5
A
132 138parallel
Strand 6
A
311 317parallel
Strand 7
A
323 328anti-parallel
Strand 8
A
338 343anti-parallel
Strand 9
A
346 348anti-parallel
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