Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J4M entry

There are 3 chains in PDB entry 5J4M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 39	PRO 302
B	THR 39	PRO 302
C	THR 39	PRO 302

There are 12 helices in PDB entry 5J4M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	90	Right-handed alpha
Helix 2	AA2	A	91	94	Right-handed 310
Helix 3	AA3	A	226	231	Right-handed alpha
Helix 4	AA4	A	238	242	Right-handed 310
Helix 5	AA5	B	83	90	Right-handed alpha
Helix 6	AA6	B	91	94	Right-handed 310
Helix 7	AA7	B	226	231	Right-handed alpha
Helix 8	AA8	B	238	242	Right-handed 310
Helix 9	AA9	C	83	90	Right-handed alpha
Helix 10	AB1	C	91	94	Right-handed 310
Helix 11	AB2	C	226	231	Right-handed alpha
Helix 12	AB3	C	238	242	Right-handed 310

There are 21 sheets in PDB entry 5J4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	120	first strand
Strand 2	A	40	46	anti-parallel
Strand 3	A	166	168	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	71	72	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	108	first strand
Strand 2	A	77	82	anti-parallel
Strand 3	A	134	141	anti-parallel
Strand 4	A	152	155	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	130	132	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	225	first strand
Strand 2	A	252	258	parallel
Strand 3	A	178	186	anti-parallel
Strand 4	A	290	295	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	197	201	anti-parallel
Strand 3	A	264	271	anti-parallel
Strand 4	A	282	285	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	211	first strand
Strand 2	A	233	237	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	120	first strand
Strand 2	B	40	46	anti-parallel
Strand 3	B	165	168	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	50	first strand
Strand 2	B	171	173	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	108	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	134	141	anti-parallel
Strand 4	B	152	155	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	130	132	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	252	258	parallel
Strand 3	B	178	186	anti-parallel
Strand 4	B	290	297	parallel
Strand 5	B	276	277	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	197	201	anti-parallel
Strand 3	B	264	271	anti-parallel
Strand 4	B	282	285	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	211	first strand
Strand 2	B	233	237	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	120	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	166	168	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	171	173	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	108	first strand
Strand 2	C	77	82	anti-parallel
Strand 3	C	134	141	anti-parallel
Strand 4	C	152	155	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	130	132	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	225	first strand
Strand 2	C	252	258	parallel
Strand 3	C	178	186	anti-parallel
Strand 4	C	290	297	parallel
Strand 5	C	276	277	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	197	201	anti-parallel
Strand 3	C	264	271	anti-parallel
Strand 4	C	282	285	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	233	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J4M

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4M