Analysis of interatomic Contacts of Structural Units in PDB entry:
5J4R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J4R entry

There is 1 chain in PDB entry 5J4R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 6SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5J4R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 25Right-handed 310
Helix 2
AA2
A
27 34Right-handed alpha
Helix 3
AA3
A
48 62Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
74 78Right-handed 310
Helix 6
AA6
A
96 115Right-handed alpha
Helix 7
AA7
A
119 131Right-handed alpha
Helix 8
AA8
A
165 176Right-handed 310
Helix 9
AA9
A
177 181Right-handed 310
Helix 10
AB1
A
211 216Right-handed alpha
Helix 11
AB2
A
220 231Right-handed alpha
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There are 4 sheets in PDB entry 5J4R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
40 44parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
270 279anti-parallel
Strand 6
A
151 155anti-parallel
Strand 7
A
83 85anti-parallel
Strand 8
A
71 72anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
40 44parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
188 195anti-parallel
Strand 5
A
270 279anti-parallel
Strand 6
A
286 289anti-parallel
Strand 7
A
136 137parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
203 209anti-parallel
Strand 4
A
239 242anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
264 265anti-parallel
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