Analysis of interatomic Contacts of Structural Units in PDB entry:
5J55


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J55 entry

There is 1 chain in PDB entry 5J55 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5J55. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed 310
Helix 2
AA2
A
57 61Right-handed 310
Helix 3
AA3
A
84 94Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
108 112Right-handed 310
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
237 243Right-handed alpha
Helix 8
AA8
A
268 272Right-handed 310
Helix 9
AA9
A
320 323Right-handed 310
Helix 10
AB1
A
358 362Right-handed 310
Helix 11
AB2
A
456 460Right-handed 310
Helix 12
AB3
A
483 485Right-handed 310
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There are 9 sheets in PDB entry 5J55. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
63 71anti-parallel
Strand 4
A
38 45anti-parallel
Strand 5
A
477 481anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
463 467anti-parallel
Strand 3
A
446 453anti-parallel
Strand 4
A
433 441anti-parallel
Strand 5
A
414 416anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
463 467anti-parallel
Strand 3
A
446 453anti-parallel
Strand 4
A
433 441anti-parallel
Strand 5
A
420 423anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
129 133anti-parallel
Strand 3
A
140 142anti-parallel
Strand 4
A
149 152anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
177 182anti-parallel
Strand 3
A
191 197anti-parallel
Strand 4
A
203 210anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
226 231anti-parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
273 277anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 236first strand
Strand 2
A
248 250anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 291first strand
Strand 2
A
294 302anti-parallel
Strand 3
A
325 333anti-parallel
Strand 4
A
343 346anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 356first strand
Strand 2
A
368 373anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
405 409anti-parallel
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