Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5C entry

There are 2 chains in PDB entry 5J5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 17GLN 181
B
 ARG 14GLU 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5J5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 40Right-handed alpha
Helix 2
AA2
A
71 82Right-handed 310
Helix 3
AA3
A
99 112Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
135 144Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
165 178Right-handed alpha
Helix 8
AA8
B
15 26Right-handed alpha
Helix 9
AA9
B
30 49Right-handed alpha
Helix 10
AB1
B
78 81Right-handed 310
Helix 11
AB2
B
82 90Right-handed alpha
Helix 12
AB3
B
92 110Right-handed alpha
Helix 13
AB4
B
125 136Right-handed alpha
Helix 14
AB5
B
144 160Right-handed alpha
Helix 15
AB6
B
167 184Right-handed alpha
Helix 16
AB7
B
187 220Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5J5C.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 58first strand
Strand 2
A
61 68anti-parallel
Strand 3
A
18 23parallel
Strand 4
A
87 93parallel
Strand 5
A
120 126parallel
Strand 6
A
153 158parallel
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