Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5D entry

There is 1 chain in PDB entry 5J5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4ARG 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5J5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
30 44Right-handed alpha
Helix 3
AA3
A
57 61Right-handed 310
Helix 4
AA4
A
62 78Right-handed alpha
Helix 5
AA5
A
91 105Right-handed alpha
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
145 150Right-handed alpha
Helix 8
AA8
A
154 163Right-handed alpha
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
195 197Right-handed 310
Helix 11
AB2
A
198 206Right-handed alpha
Helix 12
AB3
A
214 231Right-handed alpha
Helix 13
AB4
A
233 244Right-handed alpha
Helix 14
AB5
A
244 255Right-handed alpha
Helix 15
AB6
A
255 267Right-handed alpha
Helix 16
AB7
A
282 296Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5J5D.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
48 51parallel
Strand 3
A
82 86parallel
Strand 4
A
109 113parallel
Strand 5
A
140 144parallel
Strand 6
A
167 172parallel
Strand 7
A
190 193parallel
Strand 8
A
209 212parallel
Strand 9
A
15 18parallel
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