Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5E entry

There is 1 chain in PDB entry 5J5E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 529LEU 948
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5J5E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
613 627Right-handed alpha
Helix 2
AA2
A
628 631Right-handed 310
Helix 3
AA3
A
632 649Right-handed alpha
Helix 4
AA4
A
653 661Right-handed alpha
Helix 5
AA5
A
662 666Right-handed 310
Helix 6
AA6
A
669 688Right-handed alpha
Helix 7
AA7
A
692 707Right-handed alpha
Helix 8
AA8
A
707 713Right-handed alpha
Helix 9
AA9
A
721 738Right-handed alpha
Helix 10
AB1
A
740 757Right-handed alpha
Helix 11
AB2
A
767 776Right-handed alpha
Helix 12
AB3
A
778 792Right-handed alpha
Helix 13
AB4
A
794 807Right-handed alpha
Helix 14
AB5
A
810 824Right-handed alpha
Helix 15
AB6
A
828 830Right-handed 310
Helix 16
AB7
A
831 841Right-handed alpha
Helix 17
AB8
A
845 856Right-handed alpha
Helix 18
AB9
A
856 864Right-handed alpha
Helix 19
AC1
A
868 880Right-handed alpha
Helix 20
AC2
A
884 897Right-handed alpha
Helix 21
AC3
A
905 942Right-handed alpha
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There are 2 sheets in PDB entry 5J5E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
586 590first strand
Strand 2
A
541 549anti-parallel
Strand 3
A
530 538anti-parallel
Strand 4
A
609 610parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 582first strand
Strand 2
A
565 571anti-parallel
Strand 3
A
598 602anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il