Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5N entry

There are 2 chains in PDB entry 5J5N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3GLU 220
B
 SER 3GLU 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5J5N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 27Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
67 79Right-handed alpha
Helix 4
AA4
A
89 106Right-handed alpha
Helix 5
AA5
A
106 117Right-handed alpha
Helix 6
AA6
A
118 141Right-handed alpha
Helix 7
AA7
A
152 159Right-handed alpha
Helix 8
AA8
A
160 163Right-handed 310
Helix 9
AA9
A
164 173Right-handed alpha
Helix 10
AB1
A
175 180Right-handed alpha
Helix 11
AB2
A
180 192Right-handed alpha
Helix 12
AB3
A
193 200Right-handed alpha
Helix 13
AB4
A
202 218Right-handed alpha
Helix 14
AB5
B
14 28Right-handed alpha
Helix 15
AB6
B
42 49Right-handed alpha
Helix 16
AB7
B
67 79Right-handed alpha
Helix 17
AB8
B
89 106Right-handed alpha
Helix 18
AB9
B
106 117Right-handed alpha
Helix 19
AC1
B
118 141Right-handed alpha
Helix 20
AC2
B
152 159Right-handed alpha
Helix 21
AC3
B
161 172Right-handed alpha
Helix 22
AC4
B
180 193Right-handed alpha
Helix 23
AC5
B
193 200Right-handed alpha
Helix 24
AC6
B
202 217Right-handed alpha
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There are 2 sheets in PDB entry 5J5N. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
6 10parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 66anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
6 10parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 66anti-parallel
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