Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5P entry

There are 6 chains in PDB entry 5J5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ARG 400
B
 GLU 5ARG 400
C
 G 1 C 6
D
 G 1 C 6
E
 G 1 C 6
F
 G 1 C 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5J5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
20 28Right-handed alpha
Helix 3
AA3
A
28 34Right-handed alpha
Helix 4
AA4
A
37 58Right-handed alpha
Helix 5
AA5
A
93 101Right-handed alpha
Helix 6
AA6
A
122 130Right-handed alpha
Helix 7
AA7
A
189 203Right-handed alpha
Helix 8
AA8
A
226 236Right-handed alpha
Helix 9
AA9
A
284 305Right-handed alpha
Helix 10
AB1
A
316 322Right-handed alpha
Helix 11
AB2
A
333 337Right-handed 310
Helix 12
AB3
A
351 371Right-handed alpha
Helix 13
AB4
A
371 400Right-handed alpha
Helix 14
AB5
B
12 16Right-handed 310
Helix 15
AB6
B
20 28Right-handed alpha
Helix 16
AB7
B
28 34Right-handed alpha
Helix 17
AB8
B
37 58Right-handed alpha
Helix 18
AB9
B
93 101Right-handed alpha
Helix 19
AC1
B
122 130Right-handed alpha
Helix 20
AC2
B
189 203Right-handed alpha
Helix 21
AC3
B
226 236Right-handed alpha
Helix 22
AC4
B
284 305Right-handed alpha
Helix 23
AC5
B
316 322Right-handed alpha
Helix 24
AC6
B
333 337Right-handed 310
Helix 25
AC7
B
351 371Right-handed alpha
Helix 26
AC8
B
371 400Right-handed alpha
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There are 8 sheets in PDB entry 5J5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
B
104 105anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
160 164anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
143 150anti-parallel
Strand 3
A
131 140anti-parallel
Strand 4
A
171 178anti-parallel
Strand 5
A
74 78anti-parallel
Strand 6
A
63 68anti-parallel
Strand 7
A
208 213parallel
Strand 8
A
218 222anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 105first strand
Strand 2
B
17 18anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 252first strand
Strand 2
A
255 263anti-parallel
Strand 3
A
324 331anti-parallel
Strand 4
A
270 275parallel
Strand 5
A
278 279anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
160 164anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 155first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
131 140anti-parallel
Strand 4
B
171 178anti-parallel
Strand 5
B
74 78anti-parallel
Strand 6
B
63 68anti-parallel
Strand 7
B
208 213parallel
Strand 8
B
218 222anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 252first strand
Strand 2
B
255 263anti-parallel
Strand 3
B
324 331anti-parallel
Strand 4
B
270 275parallel
Strand 5
B
278 279anti-parallel
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