Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J5Q entry

There are 4 chains in PDB entry 5J5Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	ARG 400
B	GLU 5	ARG 400
C	ILE 6	SER 399
D	ILE 6	ILE 182

There are 51 helices in PDB entry 5J5Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	16	Right-handed 310
Helix 2	AA2	A	20	28	Right-handed alpha
Helix 3	AA3	A	29	34	Right-handed alpha
Helix 4	AA4	A	37	58	Right-handed alpha
Helix 5	AA5	A	94	101	Right-handed alpha
Helix 6	AA6	A	122	130	Right-handed alpha
Helix 7	AA7	A	189	203	Right-handed alpha
Helix 8	AA8	A	226	236	Right-handed alpha
Helix 9	AA9	A	284	306	Right-handed alpha
Helix 10	AB1	A	316	322	Right-handed alpha
Helix 11	AB2	A	333	337	Right-handed 310
Helix 12	AB3	A	351	369	Right-handed alpha
Helix 13	AB4	A	371	398	Right-handed alpha
Helix 14	AB5	B	12	16	Right-handed 310
Helix 15	AB6	B	21	28	Right-handed alpha
Helix 16	AB7	B	28	34	Right-handed alpha
Helix 17	AB8	B	37	58	Right-handed alpha
Helix 18	AB9	B	93	101	Right-handed alpha
Helix 19	AC1	B	122	130	Right-handed alpha
Helix 20	AC2	B	189	202	Right-handed alpha
Helix 21	AC3	B	226	237	Right-handed alpha
Helix 22	AC4	B	284	305	Right-handed alpha
Helix 23	AC5	B	316	322	Right-handed alpha
Helix 24	AC6	B	333	337	Right-handed 310
Helix 25	AC7	B	351	371	Right-handed alpha
Helix 26	AC8	B	371	399	Right-handed alpha
Helix 27	AC9	C	12	16	Right-handed 310
Helix 28	AD1	C	20	28	Right-handed alpha
Helix 29	AD2	C	29	32	Right-handed 310
Helix 30	AD3	C	37	58	Right-handed alpha
Helix 31	AD4	C	93	101	Right-handed alpha
Helix 32	AD5	C	122	130	Right-handed alpha
Helix 33	AD6	C	189	203	Right-handed alpha
Helix 34	AD7	C	226	236	Right-handed alpha
Helix 35	AD8	C	284	305	Right-handed alpha
Helix 36	AD9	C	316	322	Right-handed alpha
Helix 37	AE1	C	351	369	Right-handed alpha
Helix 38	AE2	C	371	398	Right-handed alpha
Helix 39	AE3	D	12	16	Right-handed 310
Helix 40	AE4	D	21	28	Right-handed alpha
Helix 41	AE5	D	28	34	Right-handed alpha
Helix 42	AE6	D	37	59	Right-handed alpha
Helix 43	AE7	D	93	101	Right-handed alpha
Helix 44	AE8	D	122	130	Right-handed alpha
Helix 45	AE9	D	189	201	Right-handed alpha
Helix 46	AF1	D	227	236	Right-handed alpha
Helix 47	AF2	D	284	305	Right-handed alpha
Helix 48	AF3	D	316	321	Right-handed alpha
Helix 49	AF4	D	333	337	Right-handed 310
Helix 50	AF5	D	351	369	Right-handed alpha
Helix 51	AF6	D	371	399	Right-handed alpha

There are 17 sheets in PDB entry 5J5Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	B	104	105	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	143	150	anti-parallel
Strand 3	A	160	164	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	143	150	anti-parallel
Strand 3	A	131	140	anti-parallel
Strand 4	A	171	178	anti-parallel
Strand 5	A	74	78	anti-parallel
Strand 6	A	63	68	anti-parallel
Strand 7	A	208	213	parallel
Strand 8	A	219	222	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	92	93	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	17	18	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	252	first strand
Strand 2	A	255	263	anti-parallel
Strand 3	A	324	331	anti-parallel
Strand 4	A	270	275	parallel
Strand 5	A	278	279	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	143	150	anti-parallel
Strand 3	B	160	164	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	155	first strand
Strand 2	B	143	150	anti-parallel
Strand 3	B	131	140	anti-parallel
Strand 4	B	171	178	anti-parallel
Strand 5	B	74	77	anti-parallel
Strand 6	B	63	68	anti-parallel
Strand 7	B	208	213	parallel
Strand 8	B	219	222	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	252	first strand
Strand 2	B	255	261	anti-parallel
Strand 3	B	325	331	anti-parallel
Strand 4	B	270	275	parallel
Strand 5	B	278	279	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	18	first strand
Strand 2	D	104	105	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	160	164	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	155	first strand
Strand 2	C	143	150	anti-parallel
Strand 3	C	131	140	anti-parallel
Strand 4	C	171	178	anti-parallel
Strand 5	C	74	78	anti-parallel
Strand 6	C	63	68	anti-parallel
Strand 7	C	208	213	parallel
Strand 8	C	219	222	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	105	first strand
Strand 2	D	17	18	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	252	first strand
Strand 2	C	255	263	anti-parallel
Strand 3	C	324	331	anti-parallel
Strand 4	C	271	275	parallel
Strand 5	C	278	279	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	163	164	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	143	150	anti-parallel
Strand 3	D	131	139	anti-parallel
Strand 4	D	171	178	anti-parallel
Strand 5	D	74	78	anti-parallel
Strand 6	D	63	68	anti-parallel
Strand 7	D	208	213	parallel
Strand 8	D	218	222	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	252	first strand
Strand 2	D	255	264	anti-parallel
Strand 3	D	324	331	anti-parallel
Strand 4	D	269	275	parallel
Strand 5	D	278	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J5Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5Q