Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J5U entry

There are 4 chains in PDB entry 5J5U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 36	ASN 505
B	ASN 36	ASN 505
C	ASN 36	ASN 505
D	ASN 36	ASN 505

There are103 helices in PDB entry 5J5U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	51	Right-handed alpha
Helix 2	AA2	A	51	58	Right-handed alpha
Helix 3	AA3	A	61	67	Right-handed alpha
Helix 4	AA4	A	73	80	Right-handed alpha
Helix 5	AA5	A	86	101	Right-handed alpha
Helix 6	AA6	A	101	112	Right-handed alpha
Helix 7	AA7	A	115	117	Right-handed 310
Helix 8	AA8	A	118	141	Right-handed alpha
Helix 9	AA9	A	163	182	Right-handed alpha
Helix 10	AB1	A	198	217	Right-handed alpha
Helix 11	AB2	A	221	236	Right-handed alpha
Helix 12	AB3	A	240	244	Right-handed 310
Helix 13	AB4	A	266	275	Right-handed alpha
Helix 14	AB5	A	282	292	Right-handed alpha
Helix 15	AB6	A	296	300	Right-handed alpha
Helix 16	AB7	A	328	332	Right-handed 310
Helix 17	AB8	A	335	339	Right-handed 310
Helix 18	AB9	A	344	348	Right-handed 310
Helix 19	AC1	A	357	371	Right-handed alpha
Helix 20	AC2	A	377	393	Right-handed alpha
Helix 21	AC3	A	394	397	Right-handed 310
Helix 22	AC4	A	402	413	Right-handed alpha
Helix 23	AC5	A	419	432	Right-handed alpha
Helix 24	AC6	A	435	447	Right-handed alpha
Helix 25	AC7	A	472	479	Right-handed alpha
Helix 26	AC8	A	479	490	Right-handed alpha
Helix 27	AC9	B	37	51	Right-handed alpha
Helix 28	AD1	B	51	58	Right-handed alpha
Helix 29	AD2	B	61	67	Right-handed alpha
Helix 30	AD3	B	73	80	Right-handed alpha
Helix 31	AD4	B	86	101	Right-handed alpha
Helix 32	AD5	B	101	112	Right-handed alpha
Helix 33	AD6	B	115	117	Right-handed 310
Helix 34	AD7	B	118	141	Right-handed alpha
Helix 35	AD8	B	163	182	Right-handed alpha
Helix 36	AD9	B	198	217	Right-handed alpha
Helix 37	AE1	B	221	236	Right-handed alpha
Helix 38	AE2	B	240	244	Right-handed 310
Helix 39	AE3	B	266	275	Right-handed alpha
Helix 40	AE4	B	282	292	Right-handed alpha
Helix 41	AE5	B	296	300	Right-handed alpha
Helix 42	AE6	B	328	332	Right-handed 310
Helix 43	AE7	B	335	339	Right-handed 310
Helix 44	AE8	B	344	348	Right-handed 310
Helix 45	AE9	B	357	371	Right-handed alpha
Helix 46	AF1	B	377	392	Right-handed alpha
Helix 47	AF2	B	393	397	Right-handed 310
Helix 48	AF3	B	402	413	Right-handed alpha
Helix 49	AF4	B	419	432	Right-handed alpha
Helix 50	AF5	B	435	447	Right-handed alpha
Helix 51	AF6	B	472	479	Right-handed alpha
Helix 52	AF7	B	479	490	Right-handed alpha
Helix 53	AF8	C	37	51	Right-handed alpha
Helix 54	AF9	C	51	58	Right-handed alpha
Helix 55	AG1	C	61	67	Right-handed alpha
Helix 56	AG2	C	73	80	Right-handed alpha
Helix 57	AG3	C	86	112	Right-handed alpha
Helix 58	AG4	C	115	117	Right-handed 310
Helix 59	AG5	C	118	141	Right-handed alpha
Helix 60	AG6	C	163	182	Right-handed alpha
Helix 61	AG7	C	198	217	Right-handed alpha
Helix 62	AG8	C	221	236	Right-handed alpha
Helix 63	AG9	C	240	244	Right-handed 310
Helix 64	AH1	C	266	275	Right-handed alpha
Helix 65	AH2	C	282	292	Right-handed alpha
Helix 66	AH3	C	296	300	Right-handed alpha
Helix 67	AH4	C	328	332	Right-handed 310
Helix 68	AH5	C	335	339	Right-handed 310
Helix 69	AH6	C	344	348	Right-handed 310
Helix 70	AH7	C	357	371	Right-handed alpha
Helix 71	AH8	C	377	392	Right-handed alpha
Helix 72	AH9	C	393	397	Right-handed 310
Helix 73	AI1	C	402	413	Right-handed alpha
Helix 74	AI2	C	419	432	Right-handed alpha
Helix 75	AI3	C	435	447	Right-handed alpha
Helix 76	AI4	C	473	479	Right-handed alpha
Helix 77	AI5	C	479	490	Right-handed alpha
Helix 78	AI6	D	37	51	Right-handed alpha
Helix 79	AI7	D	51	58	Right-handed alpha
Helix 80	AI8	D	61	67	Right-handed alpha
Helix 81	AI9	D	73	80	Right-handed alpha
Helix 82	AJ1	D	86	101	Right-handed alpha
Helix 83	AJ2	D	101	112	Right-handed alpha
Helix 84	AJ3	D	115	117	Right-handed 310
Helix 85	AJ4	D	118	141	Right-handed alpha
Helix 86	AJ5	D	163	182	Right-handed alpha
Helix 87	AJ6	D	198	217	Right-handed alpha
Helix 88	AJ7	D	221	236	Right-handed alpha
Helix 89	AJ8	D	240	244	Right-handed 310
Helix 90	AJ9	D	266	275	Right-handed alpha
Helix 91	AK1	D	282	292	Right-handed alpha
Helix 92	AK2	D	296	300	Right-handed alpha
Helix 93	AK3	D	328	332	Right-handed 310
Helix 94	AK4	D	335	339	Right-handed 310
Helix 95	AK5	D	344	348	Right-handed 310
Helix 96	AK6	D	357	371	Right-handed alpha
Helix 97	AK7	D	377	393	Right-handed alpha
Helix 98	AK8	D	394	397	Right-handed 310
Helix 99	AK9	D	402	413	Right-handed alpha
Helix 100	AL1	D	419	432	Right-handed alpha
Helix 101	AL2	D	435	447	Right-handed alpha
Helix 102	AL3	D	472	479	Right-handed alpha
Helix 103	AL4	D	479	490	Right-handed alpha

There are 13 sheets in PDB entry 5J5U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	280	281	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	353	356	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	341	342	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	280	281	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	353	356	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	341	342	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	280	281	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	247	first strand
Strand 2	C	353	356	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	341	342	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	280	281	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	161	162	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	353	356	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J5U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5U