Analysis of interatomic Contacts of Structural Units in PDB entry:
5J5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J5V entry

There are 8 chains in PDB entry 5J5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2VAL 41
A
 CYS 43ASP 314
B
 LEU 132ILE 227
C
 ILE 2ASN 124
D
 GLY 2VAL 41
D
 CYS 43ASP 314
E
 LEU 132ILE 227
F
 ILE 2ILE 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5J5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed 310
Helix 2
AA2
A
41 56Right-handed alpha
Helix 3
AA3
A
71 85Right-handed alpha
Helix 4
AA4
A
97 107Right-handed alpha
Helix 5
AA5
A
115 117Right-handed 310
Helix 6
AA6
A
118 134Right-handed alpha
Helix 7
AA7
A
147 156Right-handed alpha
Helix 8
AA8
A
156 166Right-handed alpha
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
209 216Right-handed alpha
Helix 11
AB2
A
240 244Right-handed 310
Helix 12
AB3
A
251 267Right-handed alpha
Helix 13
AB4
A
271 286Right-handed alpha
Helix 14
AB5
A
287 291Right-handed 310
Helix 15
AB6
A
302 307Right-handed 310
Helix 16
AB7
B
136 148Right-handed alpha
Helix 17
AB8
B
152 164Right-handed alpha
Helix 18
AB9
B
177 196Right-handed alpha
Helix 19
AC1
B
201 223Right-handed alpha
Helix 20
AC2
C
3 9Right-handed alpha
Helix 21
AC3
C
16 20Right-handed 310
Helix 22
AC4
C
21 31Right-handed alpha
Helix 23
AC5
C
34 38Right-handed 310
Helix 24
AC6
C
39 49Right-handed alpha
Helix 25
AC7
C
52 67Right-handed alpha
Helix 26
AC8
C
76 83Right-handed alpha
Helix 27
AC9
C
84 85Right-handed 310
Helix 28
AD1
C
86 90Right-handed 310
Helix 29
AD2
C
93 105Right-handed alpha
Helix 30
AD3
C
112 122Right-handed alpha
Helix 31
AD4
D
7 12Right-handed 310
Helix 32
AD5
D
41 56Right-handed alpha
Helix 33
AD6
D
71 85Right-handed alpha
Helix 34
AD7
D
97 107Right-handed alpha
Helix 35
AD8
D
115 117Right-handed 310
Helix 36
AD9
D
118 134Right-handed alpha
Helix 37
AE1
D
147 156Right-handed alpha
Helix 38
AE2
D
156 165Right-handed alpha
Helix 39
AE3
D
179 191Right-handed alpha
Helix 40
AE4
D
209 216Right-handed alpha
Helix 41
AE5
D
240 244Right-handed 310
Helix 42
AE6
D
251 267Right-handed alpha
Helix 43
AE7
D
271 285Right-handed alpha
Helix 44
AE8
D
286 291Right-handed 310
Helix 45
AE9
D
302 307Right-handed 310
Helix 46
AF1
E
137 148Right-handed alpha
Helix 47
AF2
E
152 164Right-handed alpha
Helix 48
AF3
E
177 197Right-handed alpha
Helix 49
AF4
E
201 223Right-handed alpha
Helix 50
AF5
F
3 9Right-handed alpha
Helix 51
AF6
F
16 20Right-handed 310
Helix 52
AF7
F
21 31Right-handed alpha
Helix 53
AF8
F
34 38Right-handed 310
Helix 54
AF9
F
39 49Right-handed alpha
Helix 55
AG1
F
53 55Right-handed 310
Helix 56
AG2
F
56 67Right-handed alpha
Helix 57
AG3
F
76 83Right-handed alpha
Helix 58
AG4
F
84 85Right-handed 310
Helix 59
AG5
F
86 90Right-handed 310
Helix 60
AG6
F
93 105Right-handed alpha
Helix 61
AG7
F
112 122Right-handed alpha
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There are 5 sheets in PDB entry 5J5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
295 299parallel
Strand 4
A
171 175parallel
Strand 5
A
199 205parallel
Strand 6
A
246 250parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
88 93parallel
Strand 3
A
64 68parallel
Strand 4
A
138 140parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
175 176anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
D
28 32anti-parallel
Strand 3
D
295 299parallel
Strand 4
D
171 175parallel
Strand 5
D
199 205parallel
Strand 6
D
246 250parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
110 114first strand
Strand 2
D
88 93parallel
Strand 3
D
64 68parallel
Strand 4
D
138 140parallel
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