Analysis of interatomic Contacts of Structural Units in PDB entry:
5J60

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J60 entry

There are 3 chains in PDB entry 5J60 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -2	HIS 317
B	SER -1	HIS 317
C	GLU 2	LEU 64

There are 42 helices in PDB entry 5J60. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-2	4	Right-handed alpha
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	41	46	Right-handed alpha
Helix 4	AA4	A	60	75	Right-handed alpha
Helix 5	AA5	A	135	140	Right-handed alpha
Helix 6	AA6	A	141	144	Right-handed 310
Helix 7	AA7	A	154	165	Right-handed alpha
Helix 8	AA8	A	185	191	Right-handed alpha
Helix 9	AA9	A	245	249	Right-handed 310
Helix 10	AB1	A	277	281	Right-handed 310
Helix 11	AB2	A	286	306	Right-handed alpha
Helix 12	AB3	B	0	4	Right-handed alpha
Helix 13	AB4	B	14	27	Right-handed alpha
Helix 14	AB5	B	41	46	Right-handed alpha
Helix 15	AB6	B	60	75	Right-handed alpha
Helix 16	AB7	B	135	140	Right-handed alpha
Helix 17	AB8	B	141	144	Right-handed 310
Helix 18	AB9	B	154	166	Right-handed alpha
Helix 19	AC1	B	185	191	Right-handed alpha
Helix 20	AC2	B	245	249	Right-handed 310
Helix 21	AC3	B	277	281	Right-handed 310
Helix 22	AC4	B	286	307	Right-handed alpha
Helix 23	AC5	C	14	27	Right-handed alpha
Helix 24	AC6	C	41	46	Right-handed alpha
Helix 25	AC7	C	60	75	Right-handed alpha
Helix 26	AC8	C	135	140	Right-handed alpha
Helix 27	AC9	C	141	144	Right-handed 310
Helix 28	AD1	C	154	165	Right-handed alpha
Helix 29	AD2	C	186	192	Right-handed alpha
Helix 30	AD3	C	245	249	Right-handed 310
Helix 31	AD4	C	277	281	Right-handed 310
Helix 32	AD5	C	286	306	Right-handed alpha
Helix 33	AD6	D	14	27	Right-handed alpha
Helix 34	AD7	D	41	46	Right-handed alpha
Helix 35	AD8	D	60	75	Right-handed alpha
Helix 36	AD9	D	135	140	Right-handed alpha
Helix 37	AE1	D	141	144	Right-handed 310
Helix 38	AE2	D	154	166	Right-handed alpha
Helix 39	AE3	D	186	191	Right-handed alpha
Helix 40	AE4	D	245	249	Right-handed 310
Helix 41	AE5	D	277	281	Right-handed 310
Helix 42	AE6	D	286	306	Right-handed alpha

There are 15 sheets in PDB entry 5J60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	11	parallel
Strand 4	A	101	110	parallel
Strand 5	A	94	98	anti-parallel
Strand 6	A	86	88	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	31	35	parallel
Strand 3	A	5	11	parallel
Strand 4	A	101	110	parallel
Strand 5	A	273	275	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	233	236	parallel
Strand 3	A	147	151	parallel
Strand 4	A	170	175	parallel
Strand 5	A	195	199	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	209	first strand
Strand 2	A	212	219	anti-parallel
Strand 3	A	227	230	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	11	parallel
Strand 4	B	101	110	parallel
Strand 5	B	94	98	anti-parallel
Strand 6	B	86	88	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	81	first strand
Strand 2	B	31	35	parallel
Strand 3	B	5	11	parallel
Strand 4	B	101	110	parallel
Strand 5	B	273	275	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	233	236	parallel
Strand 3	B	147	151	parallel
Strand 4	B	170	175	parallel
Strand 5	B	195	199	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	209	first strand
Strand 2	B	212	219	anti-parallel
Strand 3	B	227	230	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	31	35	parallel
Strand 3	C	5	11	parallel
Strand 4	C	101	110	parallel
Strand 5	C	94	98	anti-parallel
Strand 6	C	86	88	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	81	first strand
Strand 2	C	31	35	parallel
Strand 3	C	5	11	parallel
Strand 4	C	101	110	parallel
Strand 5	C	273	275	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	133	first strand
Strand 2	C	233	236	parallel
Strand 3	C	147	151	parallel
Strand 4	C	170	175	parallel
Strand 5	C	195	199	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	31	35	parallel
Strand 3	D	5	11	parallel
Strand 4	D	101	110	parallel
Strand 5	D	94	98	anti-parallel
Strand 6	D	86	88	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	31	35	parallel
Strand 3	D	5	11	parallel
Strand 4	D	101	110	parallel
Strand 5	D	273	275	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	198	first strand
Strand 2	D	170	174	parallel
Strand 3	D	147	151	parallel
Strand 4	D	233	236	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	206	first strand
Strand 2	D	216	217	anti-parallel
Strand 3	D	228	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J60

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J60