Analysis of interatomic Contacts of Structural Units in PDB entry:
5J61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J61 entry

There are 8 chains in PDB entry 5J61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 160
B	MET 1	ASN 161
C	MET 1	ASN 161
D	MET 1	ILE 160
E	MET 1	ILE 160
F	MET 1	ILE 160
G	MET 1	ASN 161
H	MET 1	ASP 159

There are 33 helices in PDB entry 5J61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	62	Right-handed alpha
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	108	127	Right-handed alpha
Helix 4	AA4	A	158	160	Right-handed 310
Helix 5	AA5	B	48	62	Right-handed alpha
Helix 6	AA6	B	89	93	Right-handed 310
Helix 7	AA7	B	108	127	Right-handed alpha
Helix 8	AA8	B	158	160	Right-handed 310
Helix 9	AA9	C	48	62	Right-handed alpha
Helix 10	AB1	C	89	93	Right-handed 310
Helix 11	AB2	C	108	127	Right-handed alpha
Helix 12	AB3	C	128	130	Right-handed 310
Helix 13	AB4	C	158	160	Right-handed 310
Helix 14	AB5	D	48	62	Right-handed alpha
Helix 15	AB6	D	89	93	Right-handed 310
Helix 16	AB7	D	108	127	Right-handed alpha
Helix 17	AB8	D	128	130	Right-handed 310
Helix 18	AB9	E	48	62	Right-handed alpha
Helix 19	AC1	E	89	93	Right-handed 310
Helix 20	AC2	E	108	127	Right-handed alpha
Helix 21	AC3	E	128	130	Right-handed 310
Helix 22	AC4	E	158	160	Right-handed 310
Helix 23	AC5	F	48	62	Right-handed alpha
Helix 24	AC6	F	89	93	Right-handed 310
Helix 25	AC7	F	108	127	Right-handed alpha
Helix 26	AC8	F	128	130	Right-handed 310
Helix 27	AC9	F	158	160	Right-handed 310
Helix 28	AD1	G	48	62	Right-handed alpha
Helix 29	AD2	G	89	93	Right-handed 310
Helix 30	AD3	G	108	127	Right-handed alpha
Helix 31	AD4	H	48	62	Right-handed alpha
Helix 32	AD5	H	89	93	Right-handed 310
Helix 33	AD6	H	108	127	Right-handed alpha

There are 10 sheets in PDB entry 5J61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	33	first strand
Strand 2	A	2	15	anti-parallel
Strand 3	A	141	156	anti-parallel
Strand 4	B	141	156	anti-parallel
Strand 5	B	2	15	anti-parallel
Strand 6	B	28	33	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	82	87	parallel
Strand 3	A	36	42	parallel
Strand 4	A	2	15	anti-parallel
Strand 5	A	141	156	anti-parallel
Strand 6	B	141	156	anti-parallel
Strand 7	B	2	15	anti-parallel
Strand 8	B	36	42	anti-parallel
Strand 9	B	82	87	parallel
Strand 10	B	132	134	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	33	first strand
Strand 2	C	2	15	anti-parallel
Strand 3	C	141	156	anti-parallel
Strand 4	D	141	156	anti-parallel
Strand 5	D	2	15	anti-parallel
Strand 6	D	28	33	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	82	87	parallel
Strand 3	C	36	42	parallel
Strand 4	C	2	15	anti-parallel
Strand 5	C	141	156	anti-parallel
Strand 6	D	141	156	anti-parallel
Strand 7	D	2	15	anti-parallel
Strand 8	D	36	42	anti-parallel
Strand 9	D	82	87	parallel
Strand 10	D	132	134	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	33	first strand
Strand 2	E	2	15	anti-parallel
Strand 3	E	141	156	anti-parallel
Strand 4	F	141	156	anti-parallel
Strand 5	F	2	15	anti-parallel
Strand 6	F	28	33	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	82	87	parallel
Strand 3	E	36	42	parallel
Strand 4	E	2	15	anti-parallel
Strand 5	E	141	156	anti-parallel
Strand 6	F	141	156	anti-parallel
Strand 7	F	2	15	anti-parallel
Strand 8	F	36	42	anti-parallel
Strand 9	F	82	87	parallel
Strand 10	F	132	134	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	70	74	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	33	first strand
Strand 2	G	2	15	anti-parallel
Strand 3	G	141	156	anti-parallel
Strand 4	H	141	156	anti-parallel
Strand 5	H	2	15	anti-parallel
Strand 6	H	28	33	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	132	134	first strand
Strand 2	G	82	87	parallel
Strand 3	G	36	42	parallel
Strand 4	G	2	15	anti-parallel
Strand 5	G	141	156	anti-parallel
Strand 6	H	141	156	anti-parallel
Strand 7	H	2	15	anti-parallel
Strand 8	H	36	42	anti-parallel
Strand 9	H	82	87	parallel
Strand 10	H	132	134	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	70	74	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J61

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J61