Analysis of interatomic Contacts of Structural Units in PDB entry:
5J62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J62 entry

There are 2 chains in PDB entry 5J62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6VAL 213
B
 ASP 7GLU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5J62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 17Right-handed alpha
Helix 2
AA2
A
29 42Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
59 79Right-handed alpha
Helix 5
AA5
A
106 125Right-handed alpha
Helix 6
AA6
A
135 140Right-handed alpha
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
159 179Right-handed alpha
Helix 9
AA9
B
8 17Right-handed alpha
Helix 10
AB1
B
29 42Right-handed alpha
Helix 11
AB2
B
45 49Right-handed 310
Helix 12
AB3
B
59 78Right-handed alpha
Helix 13
AB4
B
106 125Right-handed alpha
Helix 14
AB5
B
133 139Right-handed 310
Helix 15
AB6
B
143 153Right-handed alpha
Helix 16
AB7
B
154 157Right-handed 310
Helix 17
AB8
B
170 179Right-handed alpha
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There are 3 sheets in PDB entry 5J62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
185 194anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
52 57anti-parallel
Strand 5
B
210 213parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
B
52 57parallel
Strand 3
B
94 100anti-parallel
Strand 4
B
186 194anti-parallel
Strand 5
B
128 132anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
159 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il