Analysis of interatomic Contacts of Structural Units in PDB entry:
5J63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J63 entry

There are 4 chains in PDB entry 5J63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 305
B	MET 1	ASN 305
C	MET 1	GLY 297
D	MET 1	SER 306

There are 42 helices in PDB entry 5J63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	22	Right-handed alpha
Helix 2	AA2	A	44	52	Right-handed alpha
Helix 3	AA3	A	64	74	Right-handed alpha
Helix 4	AA4	A	89	95	Right-handed alpha
Helix 5	AA5	A	115	123	Right-handed alpha
Helix 6	AA6	A	157	175	Right-handed alpha
Helix 7	AA7	A	176	183	Right-handed alpha
Helix 8	AA8	A	191	195	Right-handed 310
Helix 9	AA9	A	202	207	Right-handed 310
Helix 10	AB1	A	213	224	Right-handed alpha
Helix 11	AB2	A	289	297	Right-handed alpha
Helix 12	AB3	B	8	22	Right-handed alpha
Helix 13	AB4	B	44	52	Right-handed alpha
Helix 14	AB5	B	64	74	Right-handed alpha
Helix 15	AB6	B	89	95	Right-handed alpha
Helix 16	AB7	B	115	123	Right-handed alpha
Helix 17	AB8	B	157	175	Right-handed alpha
Helix 18	AB9	B	176	183	Right-handed alpha
Helix 19	AC1	B	191	195	Right-handed 310
Helix 20	AC2	B	202	207	Right-handed 310
Helix 21	AC3	B	213	224	Right-handed alpha
Helix 22	AC4	B	289	297	Right-handed alpha
Helix 23	AC5	C	8	22	Right-handed alpha
Helix 24	AC6	C	44	52	Right-handed alpha
Helix 25	AC7	C	64	75	Right-handed alpha
Helix 26	AC8	C	89	94	Right-handed alpha
Helix 27	AC9	C	115	123	Right-handed alpha
Helix 28	AD1	C	157	182	Right-handed alpha
Helix 29	AD2	C	191	195	Right-handed 310
Helix 30	AD3	C	202	207	Right-handed 310
Helix 31	AD4	C	213	224	Right-handed alpha
Helix 32	AD5	C	289	297	Right-handed alpha
Helix 33	AD6	D	8	22	Right-handed alpha
Helix 34	AD7	D	44	53	Right-handed alpha
Helix 35	AD8	D	64	75	Right-handed alpha
Helix 36	AD9	D	89	94	Right-handed alpha
Helix 37	AE1	D	115	123	Right-handed alpha
Helix 38	AE2	D	157	183	Right-handed alpha
Helix 39	AE3	D	191	195	Right-handed 310
Helix 40	AE4	D	202	207	Right-handed 310
Helix 41	AE5	D	213	224	Right-handed alpha
Helix 42	AE6	D	289	297	Right-handed alpha

There are 15 sheets in PDB entry 5J63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	25	30	parallel
Strand 3	A	2	7	parallel
Strand 4	A	78	82	parallel
Strand 5	A	100	104	parallel
Strand 6	A	127	134	anti-parallel
Strand 7	A	144	151	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	197	198	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	235	first strand
Strand 2	A	238	248	anti-parallel
Strand 3	A	273	281	anti-parallel
Strand 4	A	266	268	anti-parallel
Strand 5	A	258	261	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	235	first strand
Strand 2	A	238	248	anti-parallel
Strand 3	A	273	281	anti-parallel
Strand 4	A	287	288	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	25	30	parallel
Strand 3	B	2	7	parallel
Strand 4	B	78	82	parallel
Strand 5	B	99	104	parallel
Strand 6	B	127	134	anti-parallel
Strand 7	B	144	151	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	113	first strand
Strand 2	B	197	198	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	266	268	anti-parallel
Strand 5	B	259	261	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	235	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	273	281	anti-parallel
Strand 4	B	287	288	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	25	30	parallel
Strand 3	C	2	7	parallel
Strand 4	C	78	82	parallel
Strand 5	C	99	104	parallel
Strand 6	C	127	134	anti-parallel
Strand 7	C	144	151	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	113	first strand
Strand 2	C	197	198	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	235	first strand
Strand 2	C	238	246	anti-parallel
Strand 3	C	275	281	anti-parallel
Strand 4	C	287	288	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	25	30	parallel
Strand 3	D	2	7	parallel
Strand 4	D	78	82	parallel
Strand 5	D	99	104	parallel
Strand 6	D	127	134	anti-parallel
Strand 7	D	144	151	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	197	198	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	235	first strand
Strand 2	D	238	248	anti-parallel
Strand 3	D	272	281	anti-parallel
Strand 4	D	266	269	anti-parallel
Strand 5	D	259	261	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	235	first strand
Strand 2	D	238	248	anti-parallel
Strand 3	D	272	281	anti-parallel
Strand 4	D	287	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J63

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J63