Analysis of interatomic Contacts of Structural Units in PDB entry:
5J67

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5J67 entry

There are 3 chains in PDB entry 5J67 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 717	ARG 1288
B	LYS 717	GLY 1287
C	LYS 717	SER 851

There are 60 helices in PDB entry 5J67. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	785	789	Right-handed 310
Helix 2	AA2	A	823	836	Right-handed alpha
Helix 3	AA3	A	838	850	Right-handed alpha
Helix 4	AA4	A	871	887	Right-handed alpha
Helix 5	AA5	A	899	911	Right-handed alpha
Helix 6	AA6	A	963	966	Right-handed 310
Helix 7	AA7	A	968	985	Right-handed alpha
Helix 8	AA8	A	1143	1161	Right-handed alpha
Helix 9	AA9	A	1163	1177	Right-handed alpha
Helix 10	AB1	A	1178	1194	Right-handed alpha
Helix 11	AB2	A	1195	1197	Right-handed 310
Helix 12	AB3	A	1198	1208	Right-handed alpha
Helix 13	AB4	A	1208	1221	Right-handed alpha
Helix 14	AB5	A	1223	1230	Right-handed alpha
Helix 15	AB6	A	1262	1266	Right-handed 310
Helix 16	AB7	B	785	789	Right-handed 310
Helix 17	AB8	B	823	836	Right-handed alpha
Helix 18	AB9	B	838	850	Right-handed alpha
Helix 19	AC1	B	871	887	Right-handed alpha
Helix 20	AC2	B	899	911	Right-handed alpha
Helix 21	AC3	B	963	966	Right-handed 310
Helix 22	AC4	B	968	985	Right-handed alpha
Helix 23	AC5	B	1143	1161	Right-handed alpha
Helix 24	AC6	B	1163	1177	Right-handed alpha
Helix 25	AC7	B	1178	1194	Right-handed alpha
Helix 26	AC8	B	1195	1197	Right-handed 310
Helix 27	AC9	B	1198	1208	Right-handed alpha
Helix 28	AD1	B	1208	1221	Right-handed alpha
Helix 29	AD2	B	1223	1230	Right-handed alpha
Helix 30	AD3	B	1262	1266	Right-handed 310
Helix 31	AD4	C	785	789	Right-handed 310
Helix 32	AD5	C	823	836	Right-handed alpha
Helix 33	AD6	C	838	850	Right-handed alpha
Helix 34	AD7	C	871	887	Right-handed alpha
Helix 35	AD8	C	899	911	Right-handed alpha
Helix 36	AD9	C	963	966	Right-handed 310
Helix 37	AE1	C	968	985	Right-handed alpha
Helix 38	AE2	C	1143	1161	Right-handed alpha
Helix 39	AE3	C	1163	1177	Right-handed alpha
Helix 40	AE4	C	1178	1194	Right-handed alpha
Helix 41	AE5	C	1195	1197	Right-handed 310
Helix 42	AE6	C	1198	1208	Right-handed alpha
Helix 43	AE7	C	1208	1221	Right-handed alpha
Helix 44	AE8	C	1223	1230	Right-handed alpha
Helix 45	AE9	C	1262	1266	Right-handed 310
Helix 46	AF1	D	785	789	Right-handed 310
Helix 47	AF2	D	823	836	Right-handed alpha
Helix 48	AF3	D	838	850	Right-handed alpha
Helix 49	AF4	D	871	887	Right-handed alpha
Helix 50	AF5	D	899	911	Right-handed alpha
Helix 51	AF6	D	963	966	Right-handed 310
Helix 52	AF7	D	968	985	Right-handed alpha
Helix 53	AF8	D	1143	1161	Right-handed alpha
Helix 54	AF9	D	1163	1177	Right-handed alpha
Helix 55	AG1	D	1178	1194	Right-handed alpha
Helix 56	AG2	D	1195	1197	Right-handed 310
Helix 57	AG3	D	1198	1208	Right-handed alpha
Helix 58	AG4	D	1208	1221	Right-handed alpha
Helix 59	AG5	D	1223	1230	Right-handed alpha
Helix 60	AG6	D	1262	1266	Right-handed 310

There are 28 sheets in PDB entry 5J67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	763	767	first strand
Strand 2	A	813	817	anti-parallel
Strand 3	A	852	860	anti-parallel
Strand 4	A	952	961	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	778	first strand
Strand 2	A	802	809	anti-parallel
Strand 3	A	782	783	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	778	first strand
Strand 2	A	802	809	anti-parallel
Strand 3	A	862	869	anti-parallel
Strand 4	A	923	929	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	791	792	first strand
Strand 2	A	1131	1136	parallel
Strand 3	A	1113	1122	anti-parallel
Strand 4	A	1047	1057	anti-parallel
Strand 5	A	1069	1072	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	989	992	first strand
Strand 2	A	995	998	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1020	1021	first strand
Strand 2	A	1032	1037	anti-parallel
Strand 3	A	1099	1105	anti-parallel
Strand 4	A	1086	1092	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1234	1249	first strand
Strand 2	A	1268	1283	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	763	767	first strand
Strand 2	B	813	817	anti-parallel
Strand 3	B	852	860	anti-parallel
Strand 4	B	952	961	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	778	first strand
Strand 2	B	802	809	anti-parallel
Strand 3	B	782	783	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	775	778	first strand
Strand 2	B	802	809	anti-parallel
Strand 3	B	862	869	anti-parallel
Strand 4	B	923	929	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	791	792	first strand
Strand 2	B	1131	1136	parallel
Strand 3	B	1113	1122	anti-parallel
Strand 4	B	1047	1057	anti-parallel
Strand 5	B	1069	1072	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	992	first strand
Strand 2	B	995	998	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1020	1021	first strand
Strand 2	B	1032	1037	anti-parallel
Strand 3	B	1099	1105	anti-parallel
Strand 4	B	1086	1092	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1235	1249	first strand
Strand 2	B	1268	1282	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	763	767	first strand
Strand 2	C	813	817	anti-parallel
Strand 3	C	852	860	anti-parallel
Strand 4	C	952	961	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	775	778	first strand
Strand 2	C	802	809	anti-parallel
Strand 3	C	782	783	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	775	778	first strand
Strand 2	C	802	809	anti-parallel
Strand 3	C	862	869	anti-parallel
Strand 4	C	923	929	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	791	792	first strand
Strand 2	C	1131	1136	parallel
Strand 3	C	1113	1122	anti-parallel
Strand 4	C	1047	1057	anti-parallel
Strand 5	C	1069	1072	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	989	992	first strand
Strand 2	C	995	998	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1020	1021	first strand
Strand 2	C	1032	1037	anti-parallel
Strand 3	C	1099	1105	anti-parallel
Strand 4	C	1086	1092	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1235	1249	first strand
Strand 2	C	1268	1282	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	763	767	first strand
Strand 2	D	813	817	anti-parallel
Strand 3	D	852	860	anti-parallel
Strand 4	D	952	961	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	778	first strand
Strand 2	D	802	809	anti-parallel
Strand 3	D	782	783	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	778	first strand
Strand 2	D	802	809	anti-parallel
Strand 3	D	862	869	anti-parallel
Strand 4	D	923	929	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	791	792	first strand
Strand 2	D	1131	1136	parallel
Strand 3	D	1113	1122	anti-parallel
Strand 4	D	1047	1056	anti-parallel
Strand 5	D	1069	1072	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	989	992	first strand
Strand 2	D	995	998	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1020	1021	first strand
Strand 2	D	1032	1037	anti-parallel
Strand 3	D	1099	1105	anti-parallel
Strand 4	D	1086	1092	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1234	1249	first strand
Strand 2	D	1268	1283	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5J67

Analysis of interatomic Contacts of Structural Units in PDB entry:
5J67