Analysis of interatomic Contacts of Structural Units in PDB entry:
5J68


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5J68 entry

There is 1 chain in PDB entry 5J68 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 717ARG 1288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5J68. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
785 789Right-handed 310
Helix 2
AA2
A
823 834Right-handed alpha
Helix 3
AA3
A
838 850Right-handed alpha
Helix 4
AA4
A
871 887Right-handed alpha
Helix 5
AA5
A
899 910Right-handed alpha
Helix 6
AA6
A
911 913Right-handed 310
Helix 7
AA7
A
963 966Right-handed 310
Helix 8
AA8
A
968 985Right-handed alpha
Helix 9
AA9
A
1143 1161Right-handed alpha
Helix 10
AB1
A
1163 1177Right-handed alpha
Helix 11
AB2
A
1178 1194Right-handed alpha
Helix 12
AB3
A
1195 1197Right-handed 310
Helix 13
AB4
A
1198 1208Right-handed alpha
Helix 14
AB5
A
1208 1221Right-handed alpha
Helix 15
AB6
A
1223 1230Right-handed alpha
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There are 7 sheets in PDB entry 5J68. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
763 767first strand
Strand 2
A
813 817anti-parallel
Strand 3
A
852 860anti-parallel
Strand 4
A
952 961anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 778first strand
Strand 2
A
802 809anti-parallel
Strand 3
A
782 783anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 778first strand
Strand 2
A
802 809anti-parallel
Strand 3
A
862 869anti-parallel
Strand 4
A
923 929anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
989 992first strand
Strand 2
A
995 998anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1020 1021first strand
Strand 2
A
1032 1037anti-parallel
Strand 3
A
1099 1105anti-parallel
Strand 4
A
1086 1092anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1072first strand
Strand 2
A
1047 1057anti-parallel
Strand 3
A
1113 1122anti-parallel
Strand 4
A
1131 1136anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1234 1249first strand
Strand 2
A
1268 1283anti-parallel
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